Rmu_sc0016745.1_g000004

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016745.1
OG0023060
Physical Location & Seq
Forward (+)
17755 .. 18336
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016745.1_g000004.1.cds

Sequence Viewer

Length: 351 bp
atgggcaccggtagcaaggctagcgtgttcattcttctatctgtgagttataggcagcaccttcaacctgatcaattactaattagtatcatccgacttgcttcaccaaatgggggtgcagagaaggattattcagataatctttcttttgccggagatggatttgacaccgtagtgaaggataagcaagcagttgaagcacaatgccccggtgttgtctcttgtgctgacattctggcacttgctgcccaagatgttgtagtcctagacaatgttttcaaaagcgaaagcgaaggcgaaggtgaaggcgtcttgttagtgcctcgcgaggcgagtgcctcaaggcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

116

Amino Acids

12.22

Weight (kDa)

4.58

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023060)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000998.1_g000009 Rmu_sc0016745.1_g000004 Rmu_sc0016745.1_g000005
rosa_samantha Rh2BG677600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 113
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 3 cut(s) 65, 197, 280
AleI CACNNNNGTG 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 55, 245
AsiGI ACCGGT 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 96, 314
AsuNHI GCTAGC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 67, 232
BccI CCATC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 21, 266
BisI GCNGC 2 cut(s) 56, 246
BlsI GCNGC 2 cut(s) 57, 247
Bme1390I CCNGG 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 210
BmtI GCTAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 67, 232
BsgI GTGCAG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 8
BsiSI CCGG 3 cut(s) 9, 153, 210
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 70
Bsp68I TCGCGA 1 cut(s) 327
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 7
BspOI GCTAGC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 22, 189
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 327
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 12, 21, 197, 245
BstSCI CCNGG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 67, 232
BtsCI GGATG 1 cut(s) 90
BtuMI TCGCGA 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 22, 189
Cfr10I RCCGGY 1 cut(s) 8
CseI GACGC 1 cut(s) 298
CspAI ACCGGT 1 cut(s) 8
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
FaiI YATR 1 cut(s) 51
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 56, 246
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 56, 246
FspBI CTAG 2 cut(s) 21, 266
GluI GCNGC 2 cut(s) 56, 246
HapII CCGG 3 cut(s) 9, 153, 210
HgaI GACGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 309
HpaII CCGG 3 cut(s) 9, 153, 210
HphI GGTGA 2 cut(s) 96, 314
Hpy188I TCNGA 2 cut(s) 95, 136
Hpy188III TCNNGA 1 cut(s) 326
HpyAV CCTTC 6 cut(s) 71, 118, 172, 287, 293, 299
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 21, 197, 245
Hsp92I GRCGYC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 22, 81, 166, 221, 223
Lsp1109I GCAGC 2 cut(s) 67, 232
MaeI CTAG 2 cut(s) 21, 266
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 74, 81
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 322, 333, 349
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 3 cut(s) 9, 153, 210
MspR9I CCNGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 12, 21, 197, 245
NciI CCSGG 1 cut(s) 210
NdeII GATC 1 cut(s) 70
NheI GCTAGC 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 7
NruI TCGCGA 1 cut(s) 327
OliI CACNNNNGTG 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 2 cut(s) 57, 247
PspN4I GGNNCC 1 cut(s) 7
RruI TCGCGA 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 2 cut(s) 56, 246
Sau3AI GATC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 63, 70, 304
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 2 cut(s) 74, 81
SspMI CTAG 2 cut(s) 21, 266
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 172
TasI AATT 2 cut(s) 74, 81
TseI GCWGC 2 cut(s) 55, 245
TspDTI ATGAA 1 cut(s) 19
XspI CTAG 2 cut(s) 21, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.