Rh2BG677600

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0023060
Physical Location & Seq
Reverse (-)
88823726 .. 88824301
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG677600.1

Sequence Viewer

Length: 243 bp
ATGGGCACCGGCAGCAAGGCTAGCGTGTTCATTTATCTATCTGTGAGTTATAGGCAGCACCTTCAACCTGATCAATTAGCTAAGCAAGCAGTCGAAGCACAATGCCCCATTGTTGTCTCTTGTGTTGACATTCTGGCACTTGCTGCCCAAGATGTTGTAGTCCTAGACAATGTTTTCAAAAGCGAAAGCGAAGGCGAAGGCGTCTTGTTAGTGCCTCGCGAGGCGAGTGCCTCAAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

80

Amino Acids

8.57

Weight (kDa)

5.11

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 27 - 55 1.6e-06 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023060)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000998.1_g000009 Rmu_sc0016745.1_g000004 Rmu_sc0016745.1_g000005
rosa_samantha Rh2BG677600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 201
AgsI TTSAA 2 cut(s) 65, 178
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 121
ApeKI GCWGC 3 cut(s) 12, 55, 143
AsuNHI GCTAGC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 3 cut(s) 24, 67, 130
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 21, 164
BisI GCNGC 3 cut(s) 13, 56, 144
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 3 cut(s) 14, 57, 145
BmiI GGNNCC 1 cut(s) 7
BmtI GCTAGC 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 8
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 24, 67, 130
Bsh1236I CGCG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 70
Bsp1720I GCTNAGC 1 cut(s) 81
Bsp68I TCGCGA 1 cut(s) 219
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 7
BspOI GCTAGC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 22, 87
BstDEI CTNAG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 5 cut(s) 12, 21, 86, 95, 143
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 24, 67, 130
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 22, 87
Cfr10I RCCGGY 1 cut(s) 8
CseI GACGC 1 cut(s) 190
CviJI RGCY 2 cut(s) 20, 80
CviKI_1 RGCY 2 cut(s) 20, 80
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
FaiI YATR 1 cut(s) 51
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 13, 56, 144
Fsp4HI GCNGC 3 cut(s) 13, 56, 144
FspBI CTAG 2 cut(s) 21, 164
GluI GCNGC 3 cut(s) 13, 56, 144
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 71, 185, 191
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 21, 86, 95, 143
HpyF3I CTNAG 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 22, 81, 119
Lsp1109I GCAGC 3 cut(s) 24, 67, 130
MaeI CTAG 2 cut(s) 21, 164
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 74
MnlI CCTC 3 cut(s) 214, 225, 241
MspI CCGG 1 cut(s) 9
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 12, 21, 86, 95, 143
NdeII GATC 1 cut(s) 70
NheI GCTAGC 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 7
NruI TCGCGA 1 cut(s) 219
PkrI GCNGC 3 cut(s) 14, 57, 145
PspN4I GGNNCC 1 cut(s) 7
RruI TCGCGA 1 cut(s) 219
SatI GCNGC 3 cut(s) 13, 56, 144
Sau3AI GATC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 63, 70, 82
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 21, 164
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 74
TseI GCWGC 3 cut(s) 12, 55, 143
TspDTI ATGAA 1 cut(s) 19
XspI CTAG 2 cut(s) 21, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.