Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001009.1

Orthogroup ID

OG0031112

Physical Location & Seq

Genomic Coordinates Forward (+)

159243 .. 161218

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001009.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgcctttgcaaattgcagctaatagttctgatcaaacgaaggatcaggatctgctatctcacccgttgaagagcctagccaatcttgctggtacagttgatgggagaaacatatctacattacttcaggcatctcaaagtttacctaacactgggtcttgcatcaagaccgcacaacaggttctagatacggtttccaacatctttgaacccagtaggctttctgtttctgcctcaagtatggatgattgtgttattattgaggaacctttaaggcccataggacagtgccgatattacctgcatcagatatgcaaaagcgaagatcttcagttgatggcgatcttggaaaatcgcatagaccgcattgtttttaaactctttggaaaagacccgaatgaacttccatttgttctgcgatcacagattatcgactggttatcccatagtcctacagagattgaaagctatataaggccaagatgcatcattttgacaatttacctccgtctagaaaaatccacgtgggaggagctctgctatcatctgggatccagtttgcaaagacttttagatgccaccaatgatcctttctggagaacaggatgggtgtatactaggatgcaacattttgttgcgtttatgtacaatgaagggaagtatctggcgcaagaagcttgtgatgacgtgatggatggtgctgatacaactgttgagcatgatgagctacagtgtattagattctcctgctctataccaaatgttactaggcgaggattcattgagtgggctaggagagccaaccatgtttatggtcaagtggaaattgatgaagtgcgtaatgagatcgcaagttatgtggtgaagaacatcctcaagatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

294

Amino Acids

33.67

Weight (kDa)

5.32

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031112)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001009.1_g000030 Rmu_sc0007272.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	2 cut(s)	171, 364
AclWI	GGATC	5 cut(s)	51, 57, 546, 559, 581
AcuI	CTGAAG	2 cut(s)	110, 314
AcvI	CACGTG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	94, 647
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	70, 209, 464
AjiI	CACGTC	1 cut(s)	688
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	5 cut(s)	20, 468, 535, 677, 727
AluI	AGCT	5 cut(s)	20, 468, 535, 677, 727
Alw21I	GWGCWC	1 cut(s)	537
AlwI	GGATC	5 cut(s)	51, 57, 546, 559, 581
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	275, 476
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	53, 874
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BamHI	GGATCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	5 cut(s)	95, 331, 600, 685, 689
BclI	TGATCA	1 cut(s)	31
BfaI	CTAG	6 cut(s)	77, 185, 512, 618, 768, 792
BfmI	CTRYAG	2 cut(s)	453, 728
BfuAI	ACCTGC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	267, 553
BmrI	ACTGGG	2 cut(s)	162, 207
BmsI	GCATC	7 cut(s)	140, 171, 313, 473, 495, 565, 612
BmuI	ACTGGG	2 cut(s)	162, 207
BpmI	CTGGAG	1 cut(s)	616
BpuEI	CTTGAG	2 cut(s)	220, 860
BsaAI	YACGTR	1 cut(s)	525
BsaBI	GATNNNNATC	2 cut(s)	48, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	4 cut(s)	157, 213, 440, 555
Bse8I	GATNNNNATC	2 cut(s)	48, 341
BseGI	GGATG	5 cut(s)	250, 611, 627, 700, 870
BseJI	GATNNNNATC	2 cut(s)	48, 341
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseNI	ACTGG	4 cut(s)	157, 213, 440, 555
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	2 cut(s)	277, 478
BsiHKAI	GWGCWC	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	152
BsnI	GGCC	2 cut(s)	277, 478
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp1407I	TGTACA	1 cut(s)	645
Bsp143I	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
BspACI	CCGC	2 cut(s)	171, 364
BspANI	GGCC	2 cut(s)	277, 478
BspLI	GGNNCC	2 cut(s)	267, 553
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	5 cut(s)	51, 57, 546, 559, 581
BspQI	GCTCTTC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	645
BsrI	ACTGG	4 cut(s)	157, 213, 440, 555
BssMI	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
BssNAI	GTATAC	1 cut(s)	615
Bst1107I	GTATAC	1 cut(s)	615
Bst4CI	ACNGT	5 cut(s)	97, 193, 288, 712, 732
Bst6I	CTCTTC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	525
BstF5I	GGATG	5 cut(s)	250, 611, 627, 700, 870
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	9 cut(s)	34, 46, 52, 328, 345, 422, 554, 589, 849
BstMBI	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 363, 674, 724, 797
BstSFI	CTRYAG	2 cut(s)	453, 728
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	3 cut(s)	49, 325, 551
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	3 cut(s)	49, 325, 551
BstZ17I	GTATAC	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	277, 478
BtrI	CACGTC	1 cut(s)	688
BtsCI	GGATG	5 cut(s)	250, 611, 627, 700, 870
BtsIMutI	CAGTG	3 cut(s)	150, 293, 737
BveI	ACCTGC	1 cut(s)	309
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	93, 646
CspCI	CAANNNNNGTGG	2 cut(s)	840, 875
CviAII	CATG	2 cut(s)	719, 806
CviQI	GTAC	2 cut(s)	93, 646
DpnI	GATC	9 cut(s)	33, 45, 51, 327, 344, 421, 553, 588, 848
DpnII	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
DraI	TTTAAA	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	537
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	2 cut(s)	110, 314
Eco72I	CACGTG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	537
FaeI	CATG	2 cut(s)	722, 809
FatI	CATG	2 cut(s)	718, 805
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	5 cut(s)	257, 618, 634, 707, 857
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	6 cut(s)	77, 185, 512, 618, 768, 792
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	616
HaeIII	GGCC	2 cut(s)	277, 478
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	2 cut(s)	722, 809
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	2 cut(s)	741, 777
HphI	GGTGA	2 cut(s)	53, 874
Hpy166II	GTNNAC	2 cut(s)	143, 615
Hpy188I	TCNGA	2 cut(s)	31, 309
Hpy188III	TCNNGA	6 cut(s)	47, 166, 185, 512, 595, 877
Hpy8I	GTNNAC	2 cut(s)	143, 615
HpyAV	CCTTC	2 cut(s)	34, 647
HpyCH4III	ACNGT	5 cut(s)	97, 193, 288, 712, 732
HpyCH4IV	ACGT	2 cut(s)	524, 687
HpyCH4V	TGCA	8 cut(s)	10, 17, 162, 304, 315, 486, 562, 625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 363, 674, 724, 797
HpySE526I	ACGT	2 cut(s)	524, 687
Hsp92II	CATG	2 cut(s)	722, 809
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	7 cut(s)	140, 171, 313, 473, 495, 565, 612
MaeI	CTAG	6 cut(s)	77, 185, 512, 618, 768, 792
MaeII	ACGT	2 cut(s)	524, 687
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	9 cut(s)	33, 45, 51, 327, 344, 421, 553, 588, 848
MboI	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
MboII	GAAGA	4 cut(s)	82, 320, 335, 877
MflI	RGATCY	3 cut(s)	49, 325, 551
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	3 cut(s)	12, 498, 825
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	6 cut(s)	244, 256, 515, 523, 767, 884
Mph1103I	ATGCAT	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	2 cut(s)	272, 375
MslI	CAYNNNNRTG	1 cut(s)	810
MwoI	GCNNNNNNNGC	5 cut(s)	86, 363, 674, 724, 797
NdeII	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
NlaIII	CATG	2 cut(s)	722, 809
NlaIV	GGNNCC	2 cut(s)	267, 553
NsiI	ATGCAT	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	741, 777
PkrI	GCNGC	1 cut(s)	19
PmaCI	CACGTG	1 cut(s)	525
PmlI	CACGTG	1 cut(s)	525
Ppu21I	YACGTR	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	537
PspCI	CACGTG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	267, 553
PspPI	GGNCC	1 cut(s)	276
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	3 cut(s)	49, 325, 551
RsaI	GTAC	2 cut(s)	94, 647
RsaNI	GTAC	2 cut(s)	93, 646
RseI	CAYNNNNRTG	1 cut(s)	810
SacI	GAGCTC	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	272, 375
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	9 cut(s)	31, 43, 49, 325, 342, 419, 551, 586, 846
Sau96I	GGNCC	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	7 cut(s)	140, 171, 313, 473, 495, 565, 612
SfcI	CTRYAG	2 cut(s)	453, 728
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	2 cut(s)	235, 875
SmoI	CTYRAG	2 cut(s)	235, 875
Sse9I	AATT	3 cut(s)	12, 498, 825
SsiI	CCGC	2 cut(s)	171, 364
SspMI	CTAG	6 cut(s)	77, 185, 512, 618, 768, 792
SstI	GAGCTC	1 cut(s)	537
TaaI	ACNGT	5 cut(s)	97, 193, 288, 712, 732
TaiI	ACGT	2 cut(s)	527, 690
TaqI	TCGA	1 cut(s)	432
TasI	AATT	3 cut(s)	12, 498, 825
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	741, 777
Tru1I	TTAA	2 cut(s)	272, 375
Tru9I	TTAA	2 cut(s)	272, 375
TscAI	CASTG	3 cut(s)	157, 293, 737
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	414, 666, 769, 846
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	3 cut(s)	157, 293, 737
XbaI	TCTAGA	2 cut(s)	184, 511
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	6 cut(s)	77, 185, 512, 618, 768, 792
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.