Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007272.1

Orthogroup ID

OG0031112

Physical Location & Seq

Genomic Coordinates Forward (+)

43348 .. 50470

Gene Structure 7123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007272.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

atgttcagcaggaatgacaggaattgtcgtagtctgtccccactatgtctcatattgatccccattaaagtgacgagatcacacaaatatgctgcaaacatgtttgcaaggaaggacatccctacgagaggatgtagcgccaccctatacggaggtaggcatggcaccaatgccaaggagagtggcactctggcattacaggccatggccttaattggatgcgtgggaggcccgtgggtcaaacctccaagcacccccattatcgtcggtagttttgatcctgaaaaggatcctctttgtccaaaggatgatgacgaagatgtgctagaggcaagaatgcattacttgagtacaataggcgcattattgtacttagctcaatgcacaagaccggacacctcatttagagacgatggattcagacccatcacacaccaggaacgtcgccaacactggcatgtgtccactatccccatcccaaaacgacatgtgttttggaaggttttgctgatgttggctaatagttatgatcaaacgaaggatcaggatctgctatctcacccgttgaagagcctagccaatcttgttgatacggtttccaacatctttgaacccagtaggacttctgtttcttcctcaagtatggatgattgtgttattattgaggaacctttaaggcccataggacagcgcccgatattaccttcatcagatatgcaaaagcgaagatcttcaaatcgcacagaccgcattgtttttaaactctttggaaaagacccgaatgaacttccatttgttctgcgatcacagattatcgactggttatcccatagtcctacagagattgaaagctatataaggccaagatgcatcattttgacaatttacctccgtctagaaaaatccacgtgggaagagctctgctgtcatctggaatccagtttgcaaagacttttagatgccaccaatgatcctttctggagaacaggatgggtgtatactaggatgcaacattttgttgcgtttatgtacaatggtcaagttgtcttagacacaaccttacctcttaaaagccaaaaaagttgcaggatatcaagcattaaacctattgcagtctctttatctgagagagcccagtttgttgttaaaggctttaaccttcctcattccaccacaaggttactatgtgctctagaagggaagtatctggcgcaagaagcttgtgatgacgtgatggatggtgctgatacaactgttgagcatgatgagctacagtgcatcagattctcctactctataccaaatgttactgggcgaggattcattgagtgggctaggagagccaaccatgtttatggtcaagtggaaattgatgaagtgcgtaatgagatcgcaagttatgtggtgaagaacatcctcaagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

475

Amino Acids

54.05

Weight (kDa)

8.32

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031112)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001009.1_g000030 Rmu_sc0007272.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	998
AciI	CCGC	1 cut(s)	748
AclWI	GGATC	7 cut(s)	52, 272, 284, 297, 549, 555, 965
AcvI	CACGTG	1 cut(s)	909
AfaI	GTAC	3 cut(s)	352, 371, 1031
AfiI	CCNNNNNNNGG	2 cut(s)	128, 1176
AflIII	ACRYGT	2 cut(s)	99, 487
AgsI	TTSAA	4 cut(s)	568, 611, 735, 848
AjiI	CACGTC	1 cut(s)	1231
AjnI	CCWGG	1 cut(s)	435
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	6 cut(s)	377, 852, 919, 1220, 1270, 1423
AluI	AGCT	6 cut(s)	377, 852, 919, 1220, 1270, 1423
Alw21I	GWGCWC	2 cut(s)	921, 1192
Alw26I	GTCTC	3 cut(s)	53, 402, 1120
AlwI	GGATC	7 cut(s)	52, 272, 284, 297, 549, 555, 965
AlwNI	CAGNNNCTG	1 cut(s)	550
AoxI	GGCC	5 cut(s)	201, 207, 229, 677, 860
ApeKI	GCWGC	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	477, 509
Asp700I	GAANNNNTTC	1 cut(s)	730
AspLEI	GCGC	4 cut(s)	140, 362, 693, 1213
AspS9I	GGNCC	2 cut(s)	230, 678
AsuHPI	GGTGA	2 cut(s)	551, 1417
BaeI	ACNNNNGTAYC	2 cut(s)	1239, 1272
BamHI	GGATCC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	2 cut(s)	921, 1135
BbrPI	CACGTG	1 cut(s)	909
Bbv12I	GWGCWC	2 cut(s)	921, 1192
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	6 cut(s)	407, 434, 482, 984, 1228, 1232
BciT130I	CCWGG	1 cut(s)	437
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	3 cut(s)	53, 402, 1120
BfaI	CTAG	6 cut(s)	326, 575, 896, 1002, 1193, 1335
BfmI	CTRYAG	2 cut(s)	837, 1271
BfoI	RGCGCY	2 cut(s)	141, 694
BglII	AGATCT	1 cut(s)	728
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	1231
BmgT120I	GGNCC	2 cut(s)	230, 678
BmiI	GGNNCC	3 cut(s)	166, 291, 669
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	3 cut(s)	609, 1129, 1320
BmsI	GCATC	6 cut(s)	209, 857, 879, 949, 996, 1287
BmuI	ACTGGG	3 cut(s)	609, 1129, 1320
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	1 cut(s)	1000
BpuEI	CTTGAG	3 cut(s)	367, 622, 1403
BsaAI	YACGTR	1 cut(s)	909
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	3 cut(s)	174, 204, 233
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 1176
Bse1I	ACTGG	6 cut(s)	458, 615, 824, 939, 1135, 1315
Bse8I	GATNNNNATC	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	3 cut(s)	174, 204, 233
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	128, 1176
BseMII	CTCAG	1 cut(s)	1116
BseNI	ACTGG	6 cut(s)	458, 615, 824, 939, 1135, 1315
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	5 cut(s)	203, 209, 231, 679, 862
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	921, 1192
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	128, 1176
BsmAI	GTCTC	3 cut(s)	53, 402, 1120
BsmBI	CGTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	5 cut(s)	203, 209, 231, 679, 862
Bsp1286I	GDGCHC	3 cut(s)	921, 1135, 1192
Bsp1407I	TGTACA	1 cut(s)	1029
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	748
BspANI	GGCC	5 cut(s)	203, 209, 231, 679, 862
BspCNI	CTCAG	1 cut(s)	1117
BspLI	GGNNCC	3 cut(s)	166, 291, 669
BspPI	GGATC	7 cut(s)	52, 272, 284, 297, 549, 555, 965
BspQI	GCTCTTC	2 cut(s)	563, 909
BspT107I	GGYRCC	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	1029
BsrI	ACTGG	6 cut(s)	458, 615, 824, 939, 1135, 1315
BssECI	CCNNGG	3 cut(s)	174, 204, 233
BssNAI	GTATAC	1 cut(s)	999
BssT1I	CCWWGG	2 cut(s)	174, 204
Bst1107I	GTATAC	1 cut(s)	999
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	595, 1255, 1275
Bst6I	CTCTTC	2 cut(s)	563, 909
BstAUI	TGTACA	1 cut(s)	1029
BstBAI	YACGTR	1 cut(s)	909
BstDEI	CTNAG	3 cut(s)	373, 1048, 1125
BstDSI	CCRYGG	2 cut(s)	204, 233
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstH2I	RGCGCY	2 cut(s)	141, 694
BstHHI	GCGC	4 cut(s)	140, 362, 693, 1213
BstMAI	GTCTC	3 cut(s)	53, 402, 1120
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 228, 747, 1217, 1267, 1340
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	3 cut(s)	103, 461, 491
BstSCI	CCNGG	1 cut(s)	435
BstSFI	CTRYAG	2 cut(s)	837, 1271
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	3 cut(s)	289, 547, 728
BstXI	CCANNNNNNTGG	1 cut(s)	1355
BstYI	RGATCY	3 cut(s)	289, 547, 728
BstZ17I	GTATAC	1 cut(s)	999
BsuRI	GGCC	5 cut(s)	203, 209, 231, 679, 862
BtgI	CCRYGG	2 cut(s)	204, 233
BtrI	CACGTC	1 cut(s)	1231
BtsIMutI	CAGTG	2 cut(s)	451, 1280
CaiI	CAGNNNCTG	1 cut(s)	550
CfoI	GCGC	4 cut(s)	140, 362, 693, 1213
Cfr13I	GGNCC	2 cut(s)	230, 678
Csp6I	GTAC	3 cut(s)	351, 370, 1030
CspCI	CAANNNNNGTGG	4 cut(s)	163, 198, 1383, 1418
CviAII	CATG	7 cut(s)	100, 161, 205, 458, 488, 1262, 1349
CviQI	GTAC	3 cut(s)	351, 370, 1030
DdeI	CTNAG	3 cut(s)	373, 1048, 1125
DraI	TTTAAA	1 cut(s)	760
Eam1104I	CTCTTC	2 cut(s)	563, 909
EarI	CTCTTC	2 cut(s)	563, 909
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	2 cut(s)	174, 204
Eco24I	GRGCYC	2 cut(s)	921, 1135
Eco32I	GATATC	1 cut(s)	1092
Eco53kI	GAGCTC	1 cut(s)	919
Eco72I	CACGTG	1 cut(s)	909
EcoICRI	GAGCTC	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	1092
EcoT14I	CCWWGG	2 cut(s)	174, 204
EcoT22I	ATGCAT	2 cut(s)	342, 872
EcoT38I	GRGCYC	2 cut(s)	921, 1135
ErhI	CCWWGG	2 cut(s)	174, 204
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	7 cut(s)	103, 164, 208, 461, 491, 1265, 1352
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	7 cut(s)	99, 160, 204, 457, 487, 1261, 1348
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	998
Fnu4HI	GCNGC	1 cut(s)	93
FriOI	GRGCYC	2 cut(s)	921, 1135
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	6 cut(s)	326, 575, 896, 1002, 1193, 1335
GlaI	GCGC	4 cut(s)	139, 361, 692, 1212
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	1000
HaeII	RGCGCY	2 cut(s)	141, 694
HaeIII	GGCC	5 cut(s)	203, 209, 231, 679, 862
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	4 cut(s)	140, 362, 693, 1213
Hin1II	CATG	7 cut(s)	103, 164, 208, 461, 491, 1265, 1352
Hin6I	GCGC	4 cut(s)	138, 360, 691, 1211
HinP1I	GCGC	4 cut(s)	138, 360, 691, 1211
HindIII	AAGCTT	1 cut(s)	1218
HinfI	GANTC	4 cut(s)	417, 935, 1284, 1320
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	2 cut(s)	551, 1417
Hpy166II	GTNNAC	2 cut(s)	465, 999
Hpy188I	TCNGA	4 cut(s)	422, 712, 1126, 1283
Hpy188III	TCNNGA	6 cut(s)	281, 545, 896, 932, 979, 1193
Hpy8I	GTNNAC	2 cut(s)	465, 999
Hpy99I	CGWCG	2 cut(s)	269, 447
HpyAV	CCTTC	6 cut(s)	106, 493, 532, 714, 1169, 1190
HpyCH4III	ACNGT	3 cut(s)	595, 1255, 1275
HpyCH4IV	ACGT	3 cut(s)	442, 908, 1230
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 228, 747, 1217, 1267, 1340
HpyF3I	CTNAG	3 cut(s)	373, 1048, 1125
HpySE526I	ACGT	3 cut(s)	442, 908, 1230
Hsp92II	CATG	7 cut(s)	103, 164, 208, 461, 491, 1265, 1352
HspAI	GCGC	4 cut(s)	138, 360, 691, 1211
Ksp22I	TGATCA	1 cut(s)	529
LguI	GCTCTTC	2 cut(s)	563, 909
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	6 cut(s)	209, 857, 879, 949, 996, 1287
MaeI	CTAG	6 cut(s)	326, 575, 896, 1002, 1193, 1335
MaeII	ACGT	3 cut(s)	442, 908, 1230
MaeIII	GTNAC	3 cut(s)	70, 1179, 1306
MboII	GAAGA	7 cut(s)	329, 580, 624, 723, 738, 926, 1420
MflI	RGATCY	3 cut(s)	289, 547, 728
MhlI	GDGCHC	3 cut(s)	921, 1135, 1192
MluCI	AATT	4 cut(s)	22, 213, 882, 1368
MmeI	TCCRAC	1 cut(s)	624
Mph1103I	ATGCAT	2 cut(s)	342, 872
MroXI	GAANNNNTTC	1 cut(s)	730
MseI	TTAA	8 cut(s)	66, 212, 674, 759, 1068, 1101, 1146, 1155
MslI	CAYNNNNRTG	4 cut(s)	68, 87, 456, 1353
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	6 cut(s)	200, 228, 747, 1217, 1267, 1340
NcoI	CCATGG	1 cut(s)	204
NlaIII	CATG	7 cut(s)	103, 164, 208, 461, 491, 1265, 1352
NlaIV	GGNNCC	3 cut(s)	166, 291, 669
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	2 cut(s)	342, 872
NspI	RCATGY	3 cut(s)	103, 461, 491
PciI	ACATGT	2 cut(s)	99, 487
PciSI	GCTCTTC	2 cut(s)	563, 909
PctI	GAATGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	4 cut(s)	417, 935, 1284, 1320
PkrI	GCNGC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	909
PmlI	CACGTG	1 cut(s)	909
Ppu21I	YACGTR	1 cut(s)	909
PscI	ACATGT	2 cut(s)	99, 487
Psp124BI	GAGCTC	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	435
PspCI	CACGTG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	3 cut(s)	166, 291, 669
PspPI	GGNCC	2 cut(s)	230, 678
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	3 cut(s)	289, 547, 728
RsaI	GTAC	3 cut(s)	352, 371, 1031
RsaNI	GTAC	3 cut(s)	351, 370, 1030
RseI	CAYNNNNRTG	4 cut(s)	68, 87, 456, 1353
SacI	GAGCTC	1 cut(s)	921
SapI	GCTCTTC	2 cut(s)	563, 909
SaqAI	TTAA	8 cut(s)	66, 212, 674, 759, 1068, 1101, 1146, 1155
SatI	GCNGC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	230, 678
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	3 cut(s)	921, 1135, 1192
SfaNI	GCATC	6 cut(s)	209, 857, 879, 949, 996, 1287
SfcI	CTRYAG	2 cut(s)	837, 1271
SmiMI	CAYNNNNRTG	4 cut(s)	68, 87, 456, 1353
SmlI	CTYRAG	3 cut(s)	346, 637, 1418
SmoI	CTYRAG	3 cut(s)	346, 637, 1418
Sse9I	AATT	4 cut(s)	22, 213, 882, 1368
SsiI	CCGC	1 cut(s)	748
SspMI	CTAG	6 cut(s)	326, 575, 896, 1002, 1193, 1335
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	2 cut(s)	174, 204
TaaI	ACNGT	3 cut(s)	595, 1255, 1275
TaiI	ACGT	3 cut(s)	445, 911, 1233
TaqI	TCGA	1 cut(s)	816
TasI	AATT	4 cut(s)	22, 213, 882, 1368
TatI	WGTACW	3 cut(s)	350, 369, 1029
TfiI	GAWTC	4 cut(s)	417, 935, 1284, 1320
Tru1I	TTAA	8 cut(s)	66, 212, 674, 759, 1068, 1101, 1146, 1155
Tru9I	TTAA	8 cut(s)	66, 212, 674, 759, 1068, 1101, 1146, 1155
TscAI	CASTG	2 cut(s)	458, 1280
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	696, 798, 1312, 1389
TspGWI	ACGGA	2 cut(s)	165, 881
TspRI	CASTG	2 cut(s)	458, 1280
XagI	CCTNNNNNAGG	1 cut(s)	126
XbaI	TCTAGA	2 cut(s)	895, 1192
XceI	RCATGY	3 cut(s)	103, 461, 491
XmiI	GTMKAC	1 cut(s)	998
XmnI	GAANNNNTTC	1 cut(s)	730
XspI	CTAG	6 cut(s)	326, 575, 896, 1002, 1193, 1335
Zsp2I	ATGCAT	2 cut(s)	342, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.