Rmu_sc0001142.1_g000009

Domain of unknown function (DUF4378)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001142.1
OG0031117
Physical Location & Seq
Reverse (-)
41835 .. 42803
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001142.1_g000009.1.cds

Sequence Viewer

Length: 372 bp
atgacaactaatgcattcatttgtttcacagggaattcgcactatagcaatggtggcctggaaagagagtccaacaatccataccatcggcaagcagtaattgacataaattcgaacaaaaatgtgaatgagaaacaaagactctcaacagagtcatcacgggcctctttctcgtcgacttgttcatcttccttatcatcactggagtgtaacagaacagcacaaccaggaacctcttcctttgacagaatcatttttcctgaaactcccccaagggatccagtaactaaccactcaagtacctcccctagatttggaaggcagtcccttgatctccgggacgtggtaaaggactctatgcatagggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4378 VARLMGL

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

8.59

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031117)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001142.1_g000009
rosa_samantha Rh7CG459700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 176
AclWI GGATC 2 cut(s) 272, 285
AcsI RAATTY 2 cut(s) 34, 109
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 2 cut(s) 314, 343
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 2 cut(s) 57, 226
AleI CACNNNNGTG 1 cut(s) 205
AlwI GGATC 2 cut(s) 272, 285
AoxI GGCC 2 cut(s) 55, 162
ApoI RAATTY 2 cut(s) 34, 109
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 338
AsuII TTCGAA 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 283, 316
BamHI GGATCC 1 cut(s) 277
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 59, 228
BcnI CCSGG 1 cut(s) 338
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 43
Bme1390I CCNGG 3 cut(s) 59, 228, 338
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 232, 279
BmrFI CCNGG 3 cut(s) 59, 228, 338
BpmI CTGGAG 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 280
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 343
Bse1I ACTGG 2 cut(s) 207, 281
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 2 cut(s) 59, 228
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 314, 343
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 207, 281
BshFI GGCC 2 cut(s) 57, 164
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 2 cut(s) 310, 353
BslI CCNNNNNNNGG 2 cut(s) 314, 343
BsmFI GGGAC 2 cut(s) 310, 353
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 2 cut(s) 57, 164
Bsp119I TTCGAA 1 cut(s) 113
Bsp143I GATC 2 cut(s) 277, 331
BspANI GGCC 2 cut(s) 57, 164
BspLI GGNNCC 2 cut(s) 232, 279
BspPI GGATC 2 cut(s) 272, 285
BspT104I TTCGAA 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 2 cut(s) 207, 281
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 2 cut(s) 277, 331
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 59, 228
Bst6I CTCTTC 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 280, 334
BstMBI GATC 2 cut(s) 277, 331
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 2 cut(s) 59, 228
BstSCI CCNGG 3 cut(s) 57, 226, 336
BstSFI CTRYAG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 2 cut(s) 57, 164
BtrI CACGTC 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 300
CviJI RGCY 2 cut(s) 57, 164
CviKI_1 RGCY 2 cut(s) 57, 164
CviQI GTAC 1 cut(s) 300
DpnI GATC 2 cut(s) 279, 333
DpnII GATC 2 cut(s) 277, 331
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 57, 226
EcoT14I CCWWGG 1 cut(s) 272
EcoT22I ATGCAT 2 cut(s) 16, 363
ErhI CCWWGG 1 cut(s) 272
FaiI YATR 5 cut(s) 45, 82, 107, 359, 363
FaqI GGGAC 2 cut(s) 310, 353
FblI GTMKAC 1 cut(s) 176
FspBI CTAG 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 57, 164
HapII CCGG 1 cut(s) 337
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 5 cut(s) 68, 141, 152, 249, 353
HpaII CCGG 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 312
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 14, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 342
Kzo9I GATC 2 cut(s) 277, 331
LpnPI CCDG 9 cut(s) 15, 44, 71, 188, 213, 240, 273, 294, 350
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 209, 283
MalI GATC 2 cut(s) 279, 333
MboI GATC 2 cut(s) 277, 331
MboII GAAGA 2 cut(s) 180, 228
MflI RGATCY 1 cut(s) 277
MluCI AATT 3 cut(s) 34, 99, 109
MlyI GAGTC 4 cut(s) 77, 135, 161, 347
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 175, 244, 313
Mph1103I ATGCAT 2 cut(s) 16, 363
MroXI GAANNNNTTC 1 cut(s) 235
MslI CAYNNNNRTG 1 cut(s) 205
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 3 cut(s) 59, 228, 338
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 2 cut(s) 59, 228
MwoI GCNNNNNNNGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 338
NdeII GATC 2 cut(s) 277, 331
NlaIV GGNNCC 2 cut(s) 232, 279
NsiI ATGCAT 2 cut(s) 16, 363
NspV TTCGAA 1 cut(s) 113
OliI CACNNNNGTG 1 cut(s) 205
PctI GAATGC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 249
PfoI TCCNGGA 1 cut(s) 336
PleI GAGTC 4 cut(s) 76, 135, 160, 347
PpsI GAGTC 4 cut(s) 76, 135, 160, 347
Psp6I CCWGG 2 cut(s) 57, 226
PspGI CCWGG 2 cut(s) 57, 226
PspN4I GGNNCC 2 cut(s) 232, 279
PspPI GGNCC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 205
SalI GTCGAC 1 cut(s) 175
Sau3AI GATC 2 cut(s) 277, 331
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 4 cut(s) 77, 135, 161, 347
ScrFI CCNGG 3 cut(s) 59, 228, 338
SetI ASST 3 cut(s) 236, 305, 345
SfcI CTRYAG 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 3 cut(s) 34, 99, 109
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 57, 226, 336
StyI CCWWGG 1 cut(s) 272
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 113, 176
TasI AATT 3 cut(s) 34, 99, 109
TfiI GAWTC 1 cut(s) 249
TscAI CASTG 1 cut(s) 207
TspDTI ATGAA 2 cut(s) 7, 174
TspRI CASTG 1 cut(s) 207
XapI RAATTY 2 cut(s) 34, 109
XmiI GTMKAC 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 309
Zsp2I ATGCAT 2 cut(s) 16, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.