Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001192.1

Orthogroup ID

OG0029355

Physical Location & Seq

Genomic Coordinates Forward (+)

74773 .. 75408

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001192.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgagcgaccaaactcagtcgactacccttcctcagcaaaacaaccaagatgaaaggggaaatgaacaagctggtgataaaactataagccagcaacaaattgatgcatcaaactggctcccgataactgctgataggaatgcaaaatggtattattcggctttccacaatgttactgcgactgttggtgccggaattctagggttaccatatgcaatgtcacaactcggttggattcctggaatcacagtcattgttctttcttggttgatcaccttctactcattctggcaacttgtggaattgcatgagagtgtgcccggaaagcgattcgatcgttacccagaactagggcaacattgttttggacccaaactggggtattggattatcatgccacaacaaactactgttcaagtggcttcaggcattgtgtattgcgtcaccggtggcaaatcattgaagaaagtctttgaacttcttattccggcatggggtgatattagaacaacttacttcatccttttctttatttgcttgcaatttgtgatatcacaatctccaaatttcaattctttaaagggagtttctctcttggctgcggcggaaagcgattcgatcgttacccagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

211

Amino Acids

23.59

Weight (kDa)

5.87

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029355)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18610
rosa_multiflora	Rmu_sc0001192.1_g000018

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	2 cut(s)	602, 605
AcsI	RAATTY	2 cut(s)	195, 565
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	4 cut(s)	350, 377, 378, 494
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	4 cut(s)	416, 463, 476, 571
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	195, 565
AsiGI	ACCGGT	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	4 cut(s)	86, 265, 436, 509
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	586
BciT130I	CCWGG	1 cut(s)	240
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	321
BfaI	CTAG	3 cut(s)	200, 350, 634
BisI	GCNGC	2 cut(s)	600, 603
BlsI	GCNGC	2 cut(s)	601, 604
Bme1390I	CCNGG	2 cut(s)	240, 321
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	3 cut(s)	119, 190, 370
BmrFI	CCNGG	2 cut(s)	240, 321
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	2 cut(s)	94, 116
BmuI	ACTGGG	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	576, 608
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 377, 378, 494
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	119, 381
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	4 cut(s)	350, 377, 378, 494
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	29, 47
BseNI	ACTGG	2 cut(s)	119, 381
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	586
Bsh1285I	CGRYCG	2 cut(s)	337, 621
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	446
BsiEI	CGRYCG	2 cut(s)	337, 621
BsiSI	CCGG	4 cut(s)	192, 321, 447, 488
BslI	CCNNNNNNNGG	4 cut(s)	350, 377, 378, 494
BsmI	GAATGC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	270, 334, 618
BspACI	CCGC	2 cut(s)	602, 605
BspCNI	CTCAG	2 cut(s)	28, 46
BspLI	GGNNCC	3 cut(s)	119, 190, 370
BspT107I	GGYRCC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	119, 381
BssAI	RCCGGY	1 cut(s)	446
BssMI	GATC	3 cut(s)	270, 334, 618
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	184, 250, 412
BstC8I	GCNNGC	2 cut(s)	92, 539
BstDEI	CTNAG	2 cut(s)	15, 33
BstEII	GGTNACC	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	3 cut(s)	273, 337, 621
BstMBI	GATC	3 cut(s)	270, 334, 618
BstMCI	CGRYCG	2 cut(s)	337, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	238, 319
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	92, 539
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	430
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	3 cut(s)	308, 394, 492
CviJI	RGCY	6 cut(s)	71, 90, 118, 161, 422, 599
CviKI_1	RGCY	6 cut(s)	71, 90, 118, 161, 422, 599
DdeI	CTNAG	2 cut(s)	15, 33
DpnI	GATC	3 cut(s)	272, 336, 620
DpnII	GATC	3 cut(s)	270, 334, 618
DraI	TTTAAA	1 cut(s)	579
EciI	GGCGGA	1 cut(s)	620
Eco32I	GATATC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	552
EcoT22I	ATGCAT	1 cut(s)	109
FaeI	CATG	3 cut(s)	311, 397, 495
FaiI	YATR	6 cut(s)	86, 211, 213, 309, 395, 493
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FatI	CATG	3 cut(s)	307, 393, 491
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	600, 603
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	600, 603
FspBI	CTAG	3 cut(s)	200, 350, 634
GluI	GCNGC	2 cut(s)	600, 603
HapII	CCGG	4 cut(s)	192, 321, 447, 488
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	311, 397, 495
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	235, 243, 330, 614
HpaII	CCGG	4 cut(s)	192, 321, 447, 488
HphI	GGTGA	4 cut(s)	86, 265, 436, 509
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	38, 286
HpyCH4III	ACNGT	3 cut(s)	184, 250, 412
HpyCH4V	TGCA	5 cut(s)	107, 143, 215, 307, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	2 cut(s)	15, 33
Hsp92II	CATG	3 cut(s)	311, 397, 495
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	270, 334, 618
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	2 cut(s)	94, 116
MaeI	CTAG	3 cut(s)	200, 350, 634
MaeIII	GTNAC	6 cut(s)	172, 204, 219, 338, 442, 622
MalI	GATC	3 cut(s)	272, 336, 620
MboI	GATC	3 cut(s)	270, 334, 618
MboII	GAAGA	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	6 cut(s)	99, 195, 302, 542, 565, 571
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	42
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	4 cut(s)	192, 321, 447, 488
MspR9I	CCNGG	2 cut(s)	240, 321
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	321
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	3 cut(s)	270, 334, 618
NlaIII	CATG	3 cut(s)	311, 397, 495
NlaIV	GGNNCC	3 cut(s)	119, 190, 370
NmuCI	GTSAC	2 cut(s)	219, 442
NsiI	ATGCAT	1 cut(s)	109
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	235, 243, 330, 614
PfoI	TCCNGGA	1 cut(s)	238
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	601, 604
Ple19I	CGATCG	2 cut(s)	337, 621
Psp6I	CCWGG	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	119, 190, 370
PspPI	GGNCC	1 cut(s)	368
PvuI	CGATCG	2 cut(s)	337, 621
RseI	CAYNNNNRTG	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	2 cut(s)	600, 603
Sau3AI	GATC	3 cut(s)	270, 334, 618
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	240, 321
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	2 cut(s)	73, 278
SfaNI	GCATC	2 cut(s)	94, 116
SgrAI	CRCCGGYG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	6 cut(s)	99, 195, 302, 542, 565, 571
SsiI	CCGC	2 cut(s)	602, 605
SspMI	CTAG	3 cut(s)	200, 350, 634
StyD4I	CCNGG	2 cut(s)	238, 319
TaaI	ACNGT	3 cut(s)	184, 250, 412
TaqI	TCGA	3 cut(s)	20, 333, 617
TasI	AATT	6 cut(s)	99, 195, 302, 542, 565, 571
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	4 cut(s)	235, 243, 330, 614
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TseFI	GTSAC	2 cut(s)	219, 442
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	2 cut(s)	219, 442
TspDTI	ATGAA	3 cut(s)	66, 78, 508
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	2 cut(s)	195, 565
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	3 cut(s)	200, 350, 634
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.