Rmu_sc0001207.1_g000006

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001207.1
Physical Location & Seq
Reverse (-)
25073 .. 25378
306 bp
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UTR
Exon/CDS
Intron
Rmu_sc0001207.1_g000006.1.cds

Sequence Viewer

Length: 306 bp
atggaaactacctttgtggcaaaagactacactgccaccattactgatcccaaagatgatgaactatctaataaggtgaaagcagatgccttactttttttgaggcgacatattgatccaagcctacgctgggagtaccttcagttgaagacacccaaagcactgtgggatgcccttaaaggacgttttgggaacattcacgatactttgctcccaggactggctgttcagtggaatggaatccgcttgcttgactacttgactatagaaagatcaatgacttcaacaaggacatgttgcgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.6

Weight (kDa)

7.78

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031119)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001207.1_g000006 Rmu_sc0009451.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 244
AclWI GGATC 2 cut(s) 41, 110
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 130, 220
AflIII ACRYGT 1 cut(s) 293
AgsI TTSAA 2 cut(s) 148, 285
AjnI CCWGG 1 cut(s) 214
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AlwI GGATC 2 cut(s) 41, 110
AspLEI GCGC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 76, 160
BpiI GAAGAC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 220
Bse1I ACTGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 130, 220
BseNI ACTGG 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 130, 220
Bsp143I GATC 3 cut(s) 46, 115, 272
BspACI CCGC 1 cut(s) 244
BspPI GGATC 2 cut(s) 41, 110
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 46, 115, 272
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 248
BstF5I GGATG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 3 cut(s) 49, 118, 275
BstMBI GATC 3 cut(s) 46, 115, 272
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 3 cut(s) 30, 161, 236
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 294
CviJI RGCY 2 cut(s) 123, 224
CviKI_1 RGCY 2 cut(s) 123, 224
CviQI GTAC 1 cut(s) 136
DpnI GATC 3 cut(s) 48, 117, 274
DpnII GATC 3 cut(s) 46, 115, 272
Eco57I CTGAAG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 297
FaiI YATR 3 cut(s) 111, 266, 295
FatI CATG 1 cut(s) 293
FokI GGATG 1 cut(s) 182
GlaI GCGC 1 cut(s) 301
GsaI CCCAGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HinfI GANTC 1 cut(s) 240
HphI GGTGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 46, 115, 272
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 4 cut(s) 115, 201, 206, 228
LweI GCATC 2 cut(s) 76, 160
MaeII ACGT 1 cut(s) 184
MalI GATC 3 cut(s) 48, 117, 274
MboI GATC 3 cut(s) 46, 115, 272
MboII GAAGA 1 cut(s) 160
MnlI CCTC 1 cut(s) 96
MseI TTAA 2 cut(s) 177, 304
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
NdeII GATC 3 cut(s) 46, 115, 272
NlaIII CATG 1 cut(s) 297
NspI RCATGY 1 cut(s) 297
PciI ACATGT 1 cut(s) 293
PfeI GAWTC 1 cut(s) 240
PscI ACATGT 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 1 cut(s) 214
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 177, 304
Sau3AI GATC 3 cut(s) 46, 115, 272
ScrFI CCNGG 1 cut(s) 216
SetI ASST 4 cut(s) 14, 78, 141, 187
SfaNI GCATC 2 cut(s) 76, 160
SfcI CTRYAG 1 cut(s) 264
SsiI CCGC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 2 cut(s) 177, 304
Tru9I TTAA 2 cut(s) 177, 304
TscAI CASTG 3 cut(s) 37, 168, 236
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 3 cut(s) 37, 168, 236
XceI RCATGY 1 cut(s) 297
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.