Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001245.1

Orthogroup ID

OG0025505

Physical Location & Seq

Genomic Coordinates Reverse (-)

31230 .. 32074

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001245.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgcttgtagttggatttcatcgctacattcttgaaaatttcaccggtgacactttggagggtgtgactgtacaggaagtggagcagcagtttgatccaaaatttgatgaggctcgagcagtagtagagggccagatcatgtctatgcgaggtcatgcaggaagatatgaagtgccttctcctccaaaacgattgatagcaactggtagttcatcagtgaatcgtgccttcctgtacattgcagcatgtgtatttggatgcgagttacataattcagtttctcttggagctgcattgagggctgttcatggttggctatgcagcgcaaaaggtacttttgtgcccttctcatgcttgcatgacaagaataatacttctctcaagtgcaaacttgaagcgatttcagacataaatttggctgacaagtatgcgcatacttggatcggaaagggcaatcaaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004856 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0005997 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019321 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Erg28 FGGY_C FGGY_N

Protein Analysis

154

Amino Acids

16.9

Weight (kDa)

7.0

Isoelectric Point (pI)

28.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025505)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001245.1_g000004
rosa_rugosa	Rorug02G0392600
rosa_samantha	Rh7DG418600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	432
AclWI	GGATC	2 cut(s)	89, 449
AcsI	RAATTY	3 cut(s)	37, 101, 412
AfaI	GTAC	3 cut(s)	72, 236, 334
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	35, 395
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
AlwI	GGATC	2 cut(s)	89, 449
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	85, 242, 290, 321
ApoI	RAATTY	3 cut(s)	37, 101, 412
AsiGI	ACCGGT	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	326, 433
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	34, 59
AvaI	CYCGRG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BbvI	GCAGC	4 cut(s)	97, 254, 277, 333
BisI	GCNGC	4 cut(s)	86, 243, 291, 322
BlsI	GCNGC	4 cut(s)	87, 244, 292, 323
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	130
BmsI	GCATC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	97, 254, 277, 333
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp1407I	TGTACA	2 cut(s)	70, 234
Bsp143I	GATC	3 cut(s)	94, 135, 441
BspANI	GGCC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	89, 449
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	2 cut(s)	70, 234
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	3 cut(s)	94, 135, 441
Bst4CI	ACNGT	1 cut(s)	70
BstAUI	TGTACA	2 cut(s)	70, 234
BstC8I	GCNNGC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	326, 433
BstKTI	GATC	3 cut(s)	97, 138, 444
BstMBI	GATC	3 cut(s)	94, 135, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	4 cut(s)	97, 254, 277, 333
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	2 cut(s)	326, 433
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	71, 235, 333
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	6 cut(s)	139, 155, 246, 308, 351, 359
CviJI	RGCY	6 cut(s)	113, 132, 290, 302, 316, 419
CviKI_1	RGCY	6 cut(s)	113, 132, 290, 302, 316, 419
CviQI	GTAC	3 cut(s)	71, 235, 333
DpnI	GATC	3 cut(s)	96, 137, 443
DpnII	GATC	3 cut(s)	94, 135, 441
Eco88I	CYCGRG	1 cut(s)	114
FaeI	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
FatI	CATG	6 cut(s)	138, 154, 245, 307, 350, 358
Fnu4HI	GCNGC	4 cut(s)	86, 243, 291, 322
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	4 cut(s)	86, 243, 291, 322
FspAI	RTGCGCAY	1 cut(s)	432
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	2 cut(s)	325, 432
GluI	GCNGC	4 cut(s)	86, 243, 291, 322
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	2 cut(s)	326, 433
Hin1II	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
Hin6I	GCGC	2 cut(s)	324, 431
HinP1I	GCGC	2 cut(s)	324, 431
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	2 cut(s)	34, 59
Hpy188I	TCNGA	2 cut(s)	406, 446
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	186, 238, 355
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	6 cut(s)	158, 242, 293, 321, 358, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
Hsp92II	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
HspAI	GCGC	2 cut(s)	324, 431
Kzo9I	GATC	3 cut(s)	94, 135, 441
LmnI	GCTCC	2 cut(s)	82, 287
LpnPI	CCDG	6 cut(s)	58, 59, 144, 146, 189, 245
Lsp1109I	GCAGC	4 cut(s)	97, 254, 277, 333
LweI	GCATC	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	47, 64, 264
MalI	GATC	3 cut(s)	96, 137, 443
MboI	GATC	3 cut(s)	94, 135, 441
MboII	GAAGA	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	37, 101, 271, 412
MnlI	CCTC	6 cut(s)	52, 103, 121, 143, 192, 291
MseI	TTAA	1 cut(s)	463
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	3 cut(s)	94, 135, 441
NlaIII	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
NmuCI	GTSAC	2 cut(s)	47, 64
NsbI	TGCGCA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	87, 244, 292, 323
PspPI	GGNCC	1 cut(s)	130
PspXI	VCTCGAGB	1 cut(s)	114
RsaI	GTAC	3 cut(s)	72, 236, 334
RsaNI	GTAC	3 cut(s)	71, 235, 333
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	4 cut(s)	86, 243, 291, 322
Sau3AI	GATC	3 cut(s)	94, 135, 441
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	3 cut(s)	154, 292, 334
SfaNI	GCATC	1 cut(s)	248
Sfr274I	CTCGAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	114, 380
SmoI	CTYRAG	2 cut(s)	114, 380
Sse9I	AATT	4 cut(s)	37, 101, 271, 412
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	37, 101, 271, 412
TatI	WGTACW	2 cut(s)	70, 234
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	47, 64
TseI	GCWGC	4 cut(s)	85, 242, 290, 321
Tsp45I	GTSAC	2 cut(s)	47, 64
TspDTI	ATGAA	4 cut(s)	8, 183, 201, 296
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	3 cut(s)	37, 101, 412
XceI	RCATGY	1 cut(s)	249
XhoI	CTCGAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.