Rh7DG418600

Xylulose kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0025505
Physical Location & Seq
Forward (+)
58911519 .. 58912380
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG418600.1

Sequence Viewer

Length: 510 bp
ATGCTTGTAGTTGGATTTCATCGCTACATTCTTGAAAATTTCACCGGCGATACTTTGGAGGGTGTGACTGTACGTGAAGTGGAGCAGCAGTTTGATCCAAAATTTGATGAGGCTCGAGCAGTAGTAGAGGGCCAGATCATGTCTATGCGAGGTCATGCAGAAAGATATGGAATGCCTTCTCCTCCAAAACGATTGATAGCAACTGGTAGTTCATCAGTGAATCGTGCCTTCCTGTACATTGCAGCGTGTGTATTTGGATGCGAGTTGTACACAGTTCGTAGATCTGATTCAGTTTCTCTTGGAGCTGCATTGAGGGCTGTTCATGGTTGGCTATGCAGTTCAAAAGGTACTTTTGTGCCCTTCTCGTGCTTGCATGACAAGAATAATACGTCTCTCAAGTGCAAACTTGAAGCTATTTCAGACATAAATTTGGTTGACAAGTATGCGTTGATGGTGAAGAAGAGACTTGAAATAGAGAACTGCCTCGTTGAAAAACTCGGATGCATGTAA

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

8.16

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_C PF02782 5 - 109 3.4e-12 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025505)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001245.1_g000004
rosa_rugosa Rorug02G0392600
rosa_samantha Rh7DG418600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 3 cut(s) 37, 101, 427
AfaI GTAC 4 cut(s) 72, 236, 269, 349
AgsI TTSAA 5 cut(s) 35, 342, 410, 470, 491
AluBI AGCT 2 cut(s) 305, 413
AluI AGCT 2 cut(s) 305, 413
Alw26I GTCTC 2 cut(s) 396, 457
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 3 cut(s) 85, 242, 305
ApoI RAATTY 3 cut(s) 37, 101, 427
Asp700I GAANNNNTTC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 34, 466
AvaI CYCGRG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 360
BaeI ACNNNNGTAYC 2 cut(s) 339, 372
BauI CACGAG 1 cut(s) 364
BbvI GCAGC 3 cut(s) 97, 254, 292
BccI CCATC 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 396, 457
BglII AGATCT 1 cut(s) 281
BisI GCNGC 3 cut(s) 86, 243, 306
BlsI GCNGC 3 cut(s) 87, 244, 307
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 130
BmsI GCATC 2 cut(s) 248, 491
BpuEI CTTGAG 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 237
BseGI GGATG 2 cut(s) 263, 506
BseMI GCAATG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 3 cut(s) 97, 254, 292
BshFI GGCC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 396, 457
BsmBI CGTCTC 1 cut(s) 396
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 360
Bsp1407I TGTACA 2 cut(s) 234, 267
Bsp143I GATC 3 cut(s) 94, 135, 281
BspANI GGCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 44
BsrGI TGTACA 2 cut(s) 234, 267
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 3 cut(s) 94, 135, 281
BssSI CACGAG 1 cut(s) 364
Bst2BI CACGAG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 70, 274
Bst6I CTCTTC 1 cut(s) 455
BstAUI TGTACA 2 cut(s) 234, 267
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 371
BstF5I GGATG 2 cut(s) 263, 506
BstKTI GATC 3 cut(s) 97, 138, 284
BstMAI GTCTC 2 cut(s) 396, 457
BstMBI GATC 3 cut(s) 94, 135, 281
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 360
BstV1I GCAGC 3 cut(s) 97, 254, 292
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 5
BtsCI GGATG 2 cut(s) 263, 506
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 4 cut(s) 71, 235, 268, 348
CviAII CATG 5 cut(s) 139, 155, 323, 374, 505
CviJI RGCY 6 cut(s) 113, 132, 305, 317, 331, 413
CviKI_1 RGCY 6 cut(s) 113, 132, 305, 317, 331, 413
CviQI GTAC 4 cut(s) 71, 235, 268, 348
DpnI GATC 3 cut(s) 96, 137, 283
DpnII GATC 3 cut(s) 94, 135, 281
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 506
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 5 cut(s) 142, 158, 326, 377, 508
FatI CATG 5 cut(s) 138, 154, 322, 373, 504
Fnu4HI GCNGC 3 cut(s) 86, 243, 306
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 3 cut(s) 86, 243, 306
GluI GCNGC 3 cut(s) 86, 243, 306
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 45
Hin1II CATG 5 cut(s) 142, 158, 326, 377, 508
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 220, 287
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 34, 466
Hpy166II GTNNAC 2 cut(s) 270, 436
Hpy188I TCNGA 3 cut(s) 286, 421, 500
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 270, 436
HpyAV CCTTC 3 cut(s) 186, 238, 370
HpyCH4III ACNGT 2 cut(s) 70, 274
HpyCH4IV ACGT 2 cut(s) 73, 389
HpyCH4V TGCA 7 cut(s) 158, 242, 308, 336, 373, 402, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 73, 389
Hsp92II CATG 5 cut(s) 142, 158, 326, 377, 508
Kzo9I GATC 3 cut(s) 94, 135, 281
LmnI GCTCC 2 cut(s) 82, 302
LpnPI CCDG 4 cut(s) 58, 146, 189, 245
Lsp1109I GCAGC 3 cut(s) 97, 254, 292
LweI GCATC 2 cut(s) 248, 491
MaeII ACGT 2 cut(s) 73, 389
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 96, 137, 283
MboI GATC 3 cut(s) 94, 135, 281
MboII GAAGA 2 cut(s) 469, 472
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 3 cut(s) 37, 101, 427
MnlI CCTC 7 cut(s) 52, 103, 121, 143, 192, 306, 494
Mph1103I ATGCAT 1 cut(s) 506
MroXI GAANNNNTTC 1 cut(s) 175
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 3 cut(s) 94, 135, 281
NlaIII CATG 5 cut(s) 142, 158, 326, 377, 508
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 508
PaeR7I CTCGAG 1 cut(s) 114
PctI GAATGC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 220, 287
PkrI GCNGC 3 cut(s) 87, 244, 307
Ppu21I YACGTR 1 cut(s) 74
PspPI GGNCC 1 cut(s) 130
PspXI VCTCGAGB 1 cut(s) 114
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 4 cut(s) 72, 236, 269, 349
RsaNI GTAC 4 cut(s) 71, 235, 268, 348
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 3 cut(s) 86, 243, 306
Sau3AI GATC 3 cut(s) 94, 135, 281
Sau96I GGNCC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 360
SetI ASST 6 cut(s) 76, 154, 307, 349, 392, 415
SfaNI GCATC 2 cut(s) 248, 491
Sfr274I CTCGAG 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 114, 395
SmoI CTYRAG 2 cut(s) 114, 395
Sse9I AATT 3 cut(s) 37, 101, 427
TaaI ACNGT 2 cut(s) 70, 274
TaiI ACGT 2 cut(s) 76, 392
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 37, 101, 427
TatI WGTACW 2 cut(s) 234, 267
TfiI GAWTC 2 cut(s) 220, 287
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 85, 242, 305
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 8, 201, 311
TspRI CASTG 1 cut(s) 222
XapI RAATTY 3 cut(s) 37, 101, 427
XceI RCATGY 1 cut(s) 508
XhoI CTCGAG 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 175
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.