Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001245.1

Orthogroup ID

OG0025505

Physical Location & Seq

Genomic Coordinates Reverse (-)

31230 .. 32074

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgcttgtagttggatttcatcgctacattcttgaaaatttcaccggtgacactttggagggtgtgactgtacaggaagtggagcagcagtttgatccaaaatttgatgaggctcgagcagtagtagagggccagatcatgtctatgcgaggtcatgcaggaagatatgaagtgccttctcctccaaaacgattgatagcaactggtagttcatcagtgaatcgtgccttcctgtacattgcagcatgtgtatttggatgcgagttacataattcagtttctcttggagctgcattgagggctgttcatggttggctatgcagcgcaaaaggtacttttgtgcccttctcatgcttgcatgacaagaataatacttctctcaagtgcaaacttgaagcgatttcagacataaatttggctgacaagtatgcgcatacttggatcggaaagggcaatcaaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004856 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0005997 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019321 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Erg28 FGGY_C FGGY_N

Protein Analysis

154

Amino Acids

16.9

Weight (kDa)

7.0

Isoelectric Point (pI)

28.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_C	PF02782	5 - 104	4.4e-08	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025505)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001245.1_g000004
rosa_rugosa	Rorug02G0392600
rosa_samantha	Rh7DG418600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	432
AclWI	GGATC	2 cut(s)	89, 449
AcsI	RAATTY	3 cut(s)	37, 101, 412
AfaI	GTAC	3 cut(s)	72, 236, 334
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	35, 395
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
AlwI	GGATC	2 cut(s)	89, 449
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	85, 242, 290, 321
ApoI	RAATTY	3 cut(s)	37, 101, 412
AsiGI	ACCGGT	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	326, 433
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	34, 59
AvaI	CYCGRG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BbvI	GCAGC	4 cut(s)	97, 254, 277, 333
BisI	GCNGC	4 cut(s)	86, 243, 291, 322
BlsI	GCNGC	4 cut(s)	87, 244, 292, 323
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	130
BmsI	GCATC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	97, 254, 277, 333
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp1407I	TGTACA	2 cut(s)	70, 234
Bsp143I	GATC	3 cut(s)	94, 135, 441
BspANI	GGCC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	89, 449
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	2 cut(s)	70, 234
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	3 cut(s)	94, 135, 441
Bst4CI	ACNGT	1 cut(s)	70
BstAUI	TGTACA	2 cut(s)	70, 234
BstC8I	GCNNGC	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	326, 433
BstKTI	GATC	3 cut(s)	97, 138, 444
BstMBI	GATC	3 cut(s)	94, 135, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	4 cut(s)	97, 254, 277, 333
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	2 cut(s)	326, 433
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	71, 235, 333
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	6 cut(s)	139, 155, 246, 308, 351, 359
CviJI	RGCY	6 cut(s)	113, 132, 290, 302, 316, 419
CviKI_1	RGCY	6 cut(s)	113, 132, 290, 302, 316, 419
CviQI	GTAC	3 cut(s)	71, 235, 333
DpnI	GATC	3 cut(s)	96, 137, 443
DpnII	GATC	3 cut(s)	94, 135, 441
Eco88I	CYCGRG	1 cut(s)	114
FaeI	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
FatI	CATG	6 cut(s)	138, 154, 245, 307, 350, 358
Fnu4HI	GCNGC	4 cut(s)	86, 243, 291, 322
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	4 cut(s)	86, 243, 291, 322
FspAI	RTGCGCAY	1 cut(s)	432
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	2 cut(s)	325, 432
GluI	GCNGC	4 cut(s)	86, 243, 291, 322
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	2 cut(s)	326, 433
Hin1II	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
Hin6I	GCGC	2 cut(s)	324, 431
HinP1I	GCGC	2 cut(s)	324, 431
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	2 cut(s)	34, 59
Hpy188I	TCNGA	2 cut(s)	406, 446
Hpy188III	TCNNGA	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	186, 238, 355
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	6 cut(s)	158, 242, 293, 321, 358, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
Hsp92II	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
HspAI	GCGC	2 cut(s)	324, 431
Kzo9I	GATC	3 cut(s)	94, 135, 441
LmnI	GCTCC	2 cut(s)	82, 287
LpnPI	CCDG	6 cut(s)	58, 59, 144, 146, 189, 245
Lsp1109I	GCAGC	4 cut(s)	97, 254, 277, 333
LweI	GCATC	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	47, 64, 264
MalI	GATC	3 cut(s)	96, 137, 443
MboI	GATC	3 cut(s)	94, 135, 441
MboII	GAAGA	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	37, 101, 271, 412
MnlI	CCTC	6 cut(s)	52, 103, 121, 143, 192, 291
MseI	TTAA	1 cut(s)	463
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	3 cut(s)	94, 135, 441
NlaIII	CATG	6 cut(s)	142, 158, 249, 311, 354, 362
NmuCI	GTSAC	2 cut(s)	47, 64
NsbI	TGCGCA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	87, 244, 292, 323
PspPI	GGNCC	1 cut(s)	130
PspXI	VCTCGAGB	1 cut(s)	114
RsaI	GTAC	3 cut(s)	72, 236, 334
RsaNI	GTAC	3 cut(s)	71, 235, 333
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	4 cut(s)	86, 243, 291, 322
Sau3AI	GATC	3 cut(s)	94, 135, 441
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	3 cut(s)	154, 292, 334
SfaNI	GCATC	1 cut(s)	248
Sfr274I	CTCGAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	114, 380
SmoI	CTYRAG	2 cut(s)	114, 380
Sse9I	AATT	4 cut(s)	37, 101, 271, 412
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	37, 101, 271, 412
TatI	WGTACW	2 cut(s)	70, 234
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	47, 64
TseI	GCWGC	4 cut(s)	85, 242, 290, 321
Tsp45I	GTSAC	2 cut(s)	47, 64
TspDTI	ATGAA	4 cut(s)	8, 183, 201, 296
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	3 cut(s)	37, 101, 412
XceI	RCATGY	1 cut(s)	249
XhoI	CTCGAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.