Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0031123

Physical Location & Seq

Genomic Coordinates Forward (+)

226810 .. 227633

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001287.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgccacgtgagaagacaacaaaagctcttgtacgtgagcttaagttgatgtccaaagaggttgaagacagcgaactagcagatgtggctgctgtcagtgcaggaaacaactatgaagtaggacaaatgattgctgaagccttgagtaaggtgggtcgaaagggtgttgtgacacttgaagaggggaaaagtgctgagaacagtctttatgttgttgaaggaatgcaatttgatcgtggttatatctcaccttacttcgtcactgatagtgagaaaatggctgttgaatatgagaactgcaagttgcttcttgttgataaaaagataacaaatgcaagagaccttgttaacattttggaggatgctataagaggaggatacccagttgtgataattgccgaagacattgaacaagaagctctggcaactcttgttgtgaacaagctcagaggatctctaaagattgctgccctaaaagctcctggatttggagatcgcaagagccagtatctcgatgatattgctatattgaccggaggtatttgcacttccatctctttttgtttggtttaccttgtcttgctcagttctattgggctaatagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044183 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051082 GO:0061077 GO:0070013 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

202

Amino Acids

22.0

Weight (kDa)

4.91

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031123)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8103366.1_g000001 Rmu_sc0001287.1_g000044

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	156
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	65, 179, 218, 287, 410
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	5 cut(s)	26, 40, 419, 445, 479
AluI	AGCT	5 cut(s)	26, 40, 419, 445, 479
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	460
ApeKI	GCWGC	2 cut(s)	89, 467
AsuHPI	GGTGA	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
BbrPI	CACGTG	1 cut(s)	8
BbsI	GAAGAC	3 cut(s)	20, 72, 408
BbvI	GCAGC	2 cut(s)	76, 454
BccI	CCATC	1 cut(s)	560
BcgI	CGANNNNNNTGC	4 cut(s)	215, 249, 503, 537
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	90, 468
BlsI	GCNGC	2 cut(s)	91, 469
Bme1390I	CCNGG	1 cut(s)	483
BmrFI	CCNGG	1 cut(s)	483
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	377
BpiI	GAAGAC	3 cut(s)	20, 72, 408
BpuEI	CTTGAG	1 cut(s)	163
BsaAI	YACGTR	2 cut(s)	8, 35
BsaI	GGTCTC	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	383, 505
BseBI	CCWGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	3 cut(s)	186, 460, 598
BseNI	ACTGG	2 cut(s)	383, 505
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	76, 454
BsgI	GTGCAG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	232, 452, 493
BspCNI	CTCAG	3 cut(s)	187, 459, 597
BspPI	GGATC	1 cut(s)	460
BspTI	CTTAAG	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	383, 505
BssMI	GATC	3 cut(s)	232, 452, 493
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	41
BstBAI	YACGTR	2 cut(s)	8, 35
BstDEI	CTNAG	3 cut(s)	195, 446, 584
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	3 cut(s)	235, 455, 496
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	3 cut(s)	232, 452, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 98, 476
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	76, 454
BstV2I	GAAGAC	3 cut(s)	20, 72, 408
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuI	GTATCC	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	103, 261
Csp6I	GTAC	1 cut(s)	32
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	195, 446, 584
DpnI	GATC	3 cut(s)	234, 454, 495
DpnII	GATC	3 cut(s)	232, 452, 493
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	156
Eco72I	CACGTG	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	481
FaiI	YATR	7 cut(s)	114, 210, 243, 291, 368, 527, 607
Fnu4HI	GCNGC	2 cut(s)	90, 468
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	2 cut(s)	90, 468
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	2 cut(s)	90, 468
HapII	CCGG	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	3 cut(s)	349, 439, 571
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	3 cut(s)	349, 439, 571
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	7, 34
HpyCH4V	TGCA	5 cut(s)	101, 226, 300, 335, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 98, 476
HpyF3I	CTNAG	3 cut(s)	195, 446, 584
HpySE526I	ACGT	2 cut(s)	7, 34
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	232, 452, 493
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	7 cut(s)	87, 396, 407, 468, 495, 518, 547
Lsp1109I	GCAGC	2 cut(s)	76, 454
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	2 cut(s)	7, 34
MaeIII	GTNAC	2 cut(s)	169, 259
MalI	GATC	3 cut(s)	234, 454, 495
MboI	GATC	3 cut(s)	232, 452, 493
MboII	GAAGA	4 cut(s)	25, 77, 191, 413
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	2 cut(s)	227, 393
MnlI	CCTC	7 cut(s)	52, 175, 352, 365, 368, 443, 530
MseI	TTAA	2 cut(s)	42, 348
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	86, 98, 476
NdeII	GATC	3 cut(s)	232, 452, 493
NmuCI	GTSAC	2 cut(s)	169, 259
PctI	GAATGC	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	2 cut(s)	91, 469
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
Ppu21I	YACGTR	2 cut(s)	8, 35
Psp6I	CCWGG	1 cut(s)	481
PspCI	CACGTG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	42, 348
SatI	GCNGC	2 cut(s)	90, 468
Sau3AI	GATC	3 cut(s)	232, 452, 493
ScrFI	CCNGG	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	41, 142
SmoI	CTYRAG	2 cut(s)	41, 142
Sse9I	AATT	2 cut(s)	227, 393
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	2 cut(s)	10, 37
TaqI	TCGA	2 cut(s)	157, 513
TasI	AATT	2 cut(s)	227, 393
Tru1I	TTAA	2 cut(s)	42, 348
Tru9I	TTAA	2 cut(s)	42, 348
TscAI	CASTG	2 cut(s)	103, 268
TseFI	GTSAC	2 cut(s)	169, 259
TseI	GCWGC	2 cut(s)	89, 467
Tsp45I	GTSAC	2 cut(s)	169, 259
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	103, 268
Vha464I	CTTAAG	1 cut(s)	41
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.