Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001291.1

Orthogroup ID

OG0019036

Physical Location & Seq

Genomic Coordinates Reverse (-)

162541 .. 163047

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggaaccacaaacccagcaaccaacggaggatggaggaagcaacaaagcagtcgggagcagtgctaacatgcattgcaggaggagcagtaccaggtgggctcctactacagatcagataagaatcctcaaggagttttatgataatggaggtaagaacccaactccagagcaggttcagaggatcactctccagatgaaacggtacggacaggtcgagaacaagaacgtcttttattggttccagaaccacaagtctcgggagaggcagaagaagaagttaacttcggatgttcatgtgcccatacaaagatcagggcttgttggtggatccattaatctcaattttgggttaacttgttctgctggtgttggtggatccatcatggaacaacgaggagaagatcaccaggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgagggaggtagcggctatggctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

168

Amino Acids

18.81

Weight (kDa)

8.55

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 90	8.7e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019036)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0180191
rosa_multiflora	Rmu_sc0000235.1_g000032 Rmu_sc0001291.1_g000045 Rmu_sc0002451.1_g000034 Rmu_sc0002557.1_g000012
rosa_rugosa	Rorug02G0268300 Rorug03G0290900 Rorug04G0003400.1 Rorug05G0164000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	5 cut(s)	191, 324, 337, 372, 385
AfaI	GTAC	2 cut(s)	91, 206
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	92, 408
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	5 cut(s)	191, 324, 337, 372, 385
Ama87I	CYCGRG	1 cut(s)	258
AseI	ATTAAT	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	398, 458
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	2 cut(s)	329, 377
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	476
BccI	CCATC	2 cut(s)	26, 389
BciT130I	CCWGG	2 cut(s)	94, 410
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	505
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme1390I	CCNGG	2 cut(s)	94, 410
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	5 cut(s)	6, 102, 242, 331, 379
BmrFI	CCNGG	2 cut(s)	94, 410
BpiI	GAAGAC	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	2 cut(s)	150, 176
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	94, 410
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	2 cut(s)	37, 295
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	73
BseRI	GAGGAG	2 cut(s)	97, 411
BseSI	GKGCMC	1 cut(s)	303
BseYI	CCCAGC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	103, 303
Bsp143I	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
BspACI	CCGC	1 cut(s)	492
BspLI	GGNNCC	5 cut(s)	6, 102, 242, 331, 379
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	5 cut(s)	191, 324, 337, 372, 385
BsrDI	GCAATG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
Bst2UI	CCWGG	2 cut(s)	94, 410
Bst4CI	ACNGT	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	37, 295
BstKTI	GATC	6 cut(s)	115, 186, 314, 332, 380, 406
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 498
BstNI	CCWGG	2 cut(s)	94, 410
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	92, 408
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	329, 377
BstYI	RGATCY	2 cut(s)	329, 377
BtsCI	GGATG	2 cut(s)	37, 295
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	163
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 205
CviAII	CATG	6 cut(s)	70, 296, 385, 439, 443, 466
CviJI	RGCY	4 cut(s)	101, 319, 495, 501
CviKI_1	RGCY	4 cut(s)	101, 319, 495, 501
CviQI	GTAC	2 cut(s)	90, 205
DpnI	GATC	6 cut(s)	114, 185, 313, 331, 379, 405
DpnII	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
Eco24I	GRGCYC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	92, 408
EcoT22I	ATGCAT	2 cut(s)	75, 444
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	6 cut(s)	73, 299, 388, 442, 446, 469
FaiI	YATR	9 cut(s)	71, 141, 297, 305, 386, 440, 444, 467, 498
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	6 cut(s)	69, 295, 384, 438, 442, 465
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	2 cut(s)	44, 302
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	1 cut(s)	505
GluI	GCNGC	1 cut(s)	493
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	150, 176
Hin1II	CATG	6 cut(s)	73, 299, 388, 442, 446, 469
HincII	GTYRAC	2 cut(s)	282, 354
HindII	GTYRAC	2 cut(s)	282, 354
HinfI	GANTC	1 cut(s)	123
HpaI	GTTAAC	2 cut(s)	282, 354
HphI	GGTGA	2 cut(s)	398, 458
Hpy166II	GTNNAC	2 cut(s)	282, 354
Hpy188I	TCNGA	4 cut(s)	117, 180, 289, 481
Hpy188III	TCNNGA	6 cut(s)	55, 167, 193, 217, 244, 260
Hpy8I	GTNNAC	2 cut(s)	282, 354
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	73, 78, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 498
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	73, 299, 388, 442, 446, 469
KspAI	GTTAAC	2 cut(s)	282, 354
Kzo9I	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
LmnI	GCTCC	3 cut(s)	57, 84, 106
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	1 cut(s)	228
MalI	GATC	6 cut(s)	114, 185, 313, 331, 379, 405
MboI	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
MboII	GAAGA	4 cut(s)	283, 286, 413, 481
MflI	RGATCY	2 cut(s)	329, 377
MhlI	GDGCHC	2 cut(s)	103, 303
MluCI	AATT	1 cut(s)	343
Mph1103I	ATGCAT	2 cut(s)	75, 444
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	3 cut(s)	281, 336, 353
MspR9I	CCNGG	2 cut(s)	94, 410
MvaI	CCWGG	2 cut(s)	94, 410
MwoI	GCNNNNNNNGC	2 cut(s)	84, 498
NdeII	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
NlaIII	CATG	6 cut(s)	73, 299, 388, 442, 446, 469
NlaIV	GGNNCC	5 cut(s)	6, 102, 242, 331, 379
NsiI	ATGCAT	2 cut(s)	75, 444
NspI	RCATGY	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	92, 408
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	92, 408
PspN4I	GGNNCC	5 cut(s)	6, 102, 242, 331, 379
PsuI	RGATCY	2 cut(s)	329, 377
RsaI	GTAC	2 cut(s)	91, 206
RsaNI	GTAC	2 cut(s)	90, 205
SaqAI	TTAA	3 cut(s)	281, 336, 353
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	6 cut(s)	112, 183, 311, 329, 377, 403
ScrFI	CCNGG	2 cut(s)	94, 410
SduI	GDGCHC	2 cut(s)	103, 303
SetI	ASST	6 cut(s)	98, 154, 177, 216, 231, 490
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	92, 408
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	343
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	281, 336, 353
Tru9I	TTAA	3 cut(s)	281, 336, 353
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	212, 284, 482
TspGWI	ACGGA	2 cut(s)	41, 222
TspRI	CASTG	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	336
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	505
Zsp2I	ATGCAT	2 cut(s)	75, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.