Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001294.1

Orthogroup ID

OG0022674

Physical Location & Seq

Genomic Coordinates Forward (+)

89446 .. 91508

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgtcttgctctttgctgcttgctcgtcgttgttcgcctccctctgggcctctcggtgtattgggtccagtatttcgcaacagtggggaacggcgtcaggagctgttcgtagattggcgccgcctccgagatcggcaaacggcaggcctgattggcatggtggctggccattgtatttgggattgtggtgaggtttataatgcagcaacaacaatcttttgcacgaagatttggtgtattttcagtgagcctggtacgcagcatatggaaggtctcttgaaacacatctatgagctgtacactgattatgtcctgaagaaccccttctatgagatggagatgcctatccgatgcgagctctttgatatgaacttaacacaggcaatacaaaaggatcgtgttgccttgttggcccgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

139

Amino Acids

15.99

Weight (kDa)

7.58

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	79 - 131	2.4e-18	Sybindin-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112131 RchiOBHm_Chr4g0392831 RchiOBHm_Chr4g0436621
rosa_multiflora	Rmu_sc0001294.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	117
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	2 cut(s)	94, 118
AfaI	GTAC	2 cut(s)	256, 299
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	103, 295, 358
AluI	AGCT	3 cut(s)	103, 295, 358
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	103
AoxI	GGCC	4 cut(s)	47, 145, 166, 411
ApeKI	GCWGC	3 cut(s)	16, 203, 259
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	47, 65, 412
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	3, 215, 271
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	2 cut(s)	107, 156
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	278
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	2 cut(s)	153, 410
BisI	GCNGC	4 cut(s)	17, 121, 204, 260
BlsI	GCNGC	4 cut(s)	18, 122, 205, 261
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	47, 65, 412
BmiI	GGNNCC	2 cut(s)	66, 119
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	330, 341
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	2 cut(s)	94, 118
BsaI	GGTCTC	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	252
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	3, 215, 271
BshFI	GGCC	4 cut(s)	49, 147, 168, 413
BshNI	GGYRCC	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	49, 147, 168, 413
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	130, 394
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	4 cut(s)	49, 147, 168, 413
BspLI	GGNNCC	2 cut(s)	66, 119
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	130, 394
BssNI	GRCGYC	2 cut(s)	94, 118
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	83
BstACI	GRCGYC	2 cut(s)	94, 118
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	4 cut(s)	21, 145, 166, 356
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	133, 397
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	130, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 153, 256, 410
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	3, 215, 271
BsuRI	GGCC	4 cut(s)	49, 147, 168, 413
BtsIMutI	CAGTG	3 cut(s)	88, 250, 300
Cac8I	GCNNGC	4 cut(s)	21, 145, 166, 356
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	47, 65, 412
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	255, 298
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	9 cut(s)	49, 103, 147, 164, 168, 250, 295, 358, 413
CviKI_1	RGCY	9 cut(s)	49, 103, 147, 164, 168, 250, 295, 358, 413
CviQI	GTAC	2 cut(s)	255, 298
DinI	GGCGCC	1 cut(s)	119
DpnI	GATC	2 cut(s)	132, 396
DpnII	GATC	2 cut(s)	130, 394
EaeI	YGGCCR	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	358
Eco147I	AGGCCT	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	360
EgeI	GGCGCC	1 cut(s)	119
EheI	GGCGCC	1 cut(s)	119
FaeI	CATG	1 cut(s)	160
FaiI	YATR	8 cut(s)	158, 198, 264, 266, 291, 309, 330, 368
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	1 cut(s)	156
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	17, 121, 204, 260
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	4 cut(s)	17, 121, 204, 260
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	4 cut(s)	17, 121, 204, 260
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	4 cut(s)	49, 147, 168, 413
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	2 cut(s)	94, 118
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	128, 350
Hpy188III	TCNNGA	3 cut(s)	98, 277, 313
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	263, 334
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	203, 222
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 153, 256, 410
Hsp92I	GRCGYC	2 cut(s)	94, 118
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	118
KasI	GGCGCC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	130, 394
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	3 cut(s)	3, 215, 271
LweI	GCATC	2 cut(s)	330, 341
MalI	GATC	2 cut(s)	132, 396
MboI	GATC	2 cut(s)	130, 394
MboII	GAAGA	2 cut(s)	238, 328
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	168
Mly113I	GGCGCC	1 cut(s)	118
MnlI	CCTC	5 cut(s)	48, 52, 60, 134, 184
Mox20I	TGGCCA	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	4 cut(s)	100, 153, 256, 410
NarI	GGCGCC	1 cut(s)	118
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	2 cut(s)	130, 394
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	66, 119
PceI	AGGCCT	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	18, 122, 205, 261
PluTI	GGCGCC	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	66, 119
PspPI	GGNCC	3 cut(s)	47, 65, 412
PstNI	CAGNNNCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	256, 299
RsaNI	GTAC	2 cut(s)	255, 298
RseI	CAYNNNNRTG	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	4 cut(s)	17, 121, 204, 260
Sau3AI	GATC	2 cut(s)	130, 394
Sau96I	GGNCC	3 cut(s)	47, 65, 412
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	5 cut(s)	105, 195, 274, 297, 360
SfaNI	GCATC	2 cut(s)	330, 341
SfoI	GGCGCC	1 cut(s)	119
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	288
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	121
SspDI	GGCGCC	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	3 cut(s)	88, 250, 307
TseI	GCWGC	3 cut(s)	16, 203, 259
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	88, 250, 307
VpaK11BI	GGWCC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.