Rmu_sc0001296.1_g000018

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001296.1
OG0029226
Physical Location & Seq
Forward (+)
71443 .. 74288
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001296.1_g000018.1.cds

Sequence Viewer

Length: 543 bp
atgtggcagtggggaccagttgctaacgtggcggtgggtccctgtgctgatgtggctgtggctgtgggtcagtgggttgagtctagagttgggcttgaaggcttctgggcttctacttggcttgcctcctcccttttttttttctttctgccgatttttctacagtatgttccagcagccggtttagcatattctagactgggtcttgggctatttcttccggttcctgaatctttggtttgggtttgctttgttgctttttgggatgaagttactgtgagtactcaagagtcagctgaacatagaattgctctagcggaagcatctgttatcgtgagggagcatactccattgactaatatgtttatgtgcctctggttcaacgaggcggttcgttttacttctcgcgatcagcttagtttcccgtatgtactatggcggttgaaagggctcaagaagattaacatgttccctgtatgcacccgcaaagatcttgttaatagcatgggccacattcgcaaggctatgcctctcagtatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616 Dirigent

Protein Analysis

180

Amino Acids

20.35

Weight (kDa)

7.7

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029226)

Species Orthologous Gene IDs
pyrus_communis pycom02g25380
rosa_multiflora Rmu_sc0001296.1_g000018

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 408
AciI CCGC 5 cut(s) 32, 317, 389, 439, 484
AfaI GTAC 2 cut(s) 283, 432
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 3 cut(s) 98, 382, 445
AluBI AGCT 2 cut(s) 296, 415
AluI AGCT 2 cut(s) 296, 415
AoxI GGCC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 3 cut(s) 14, 38, 508
AvaII GGWCC 2 cut(s) 14, 38
BanII GRGCYC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 188
BfaI CTAG 3 cut(s) 84, 195, 314
BfmI CTRYAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 490
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmcAI AGTACT 1 cut(s) 283
Bme18I GGWCC 2 cut(s) 14, 38
BmgT120I GGNCC 3 cut(s) 14, 38, 508
BmiI GGNNCC 4 cut(s) 15, 39, 40, 225
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 332
BmuI ACTGGG 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 270, 437
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 17, 204
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 17, 204
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 510
BsiSI CCGG 2 cut(s) 180, 221
BslFI GGGAC 2 cut(s) 24, 27
BslI CCNNNNNNNGG 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 24, 27
BsnI GGCC 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 2 cut(s) 409, 490
Bsp68I TCGCGA 1 cut(s) 408
BspACI CCGC 5 cut(s) 32, 317, 389, 439, 484
BspANI GGCC 1 cut(s) 510
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 4 cut(s) 15, 39, 40, 225
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 17, 204
BssAI RCCGGY 1 cut(s) 179
BssMI GATC 2 cut(s) 409, 490
Bst4CI ACNGT 2 cut(s) 165, 277
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 416, 533
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 408
BstKTI GATC 2 cut(s) 412, 493
BstMBI GATC 2 cut(s) 409, 490
BstMWI GCNNNNNNNGC 4 cut(s) 29, 53, 185, 516
BstNSI RCATGY 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 161
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 1 cut(s) 510
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 14, 77
BtuMI TCGCGA 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 14, 38, 508
Csp6I GTAC 2 cut(s) 282, 431
CviAII CATG 2 cut(s) 466, 505
CviQI GTAC 2 cut(s) 282, 431
DdeI CTNAG 2 cut(s) 416, 533
DpnI GATC 2 cut(s) 411, 492
DpnII GATC 2 cut(s) 409, 490
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 14, 38
EcoO109I RGGNCCY 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 453
FaeI CATG 2 cut(s) 469, 508
FaqI GGGAC 2 cut(s) 24, 27
FatI CATG 2 cut(s) 465, 504
FauI CCCGC 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 3 cut(s) 84, 195, 314
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 510
HapII CCGG 2 cut(s) 180, 221
Hin1II CATG 2 cut(s) 469, 508
HinfI GANTC 3 cut(s) 80, 230, 290
HpaII CCGG 2 cut(s) 180, 221
Hpy188III TCNNGA 7 cut(s) 84, 195, 227, 287, 334, 407, 454
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 165, 277
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 53, 185, 516
HpyF3I CTNAG 2 cut(s) 416, 533
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 469, 508
KflI GGGWCCC 1 cut(s) 38
Kzo9I GATC 2 cut(s) 409, 490
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 332
MaeI CTAG 3 cut(s) 84, 195, 314
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 411, 492
MboI GATC 2 cut(s) 409, 490
MboII GAAGA 2 cut(s) 209, 469
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 1 cut(s) 306
MlyI GAGTC 2 cut(s) 89, 299
MnlI CCTC 6 cut(s) 136, 139, 330, 379, 383, 540
MseI TTAA 2 cut(s) 462, 498
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 2 cut(s) 180, 221
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 4 cut(s) 29, 53, 185, 516
NdeII GATC 2 cut(s) 409, 490
NlaIII CATG 2 cut(s) 469, 508
NlaIV GGNNCC 4 cut(s) 15, 39, 40, 225
NruI TCGCGA 1 cut(s) 408
NspI RCATGY 1 cut(s) 469
PciI ACATGT 1 cut(s) 465
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 2 cut(s) 88, 298
PpsI GAGTC 2 cut(s) 88, 298
PpuMI RGGWCCY 1 cut(s) 38
PscI ACATGT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 38
PspN4I GGNNCC 4 cut(s) 15, 39, 40, 225
PspPI GGNCC 3 cut(s) 14, 38, 508
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 1 cut(s) 490
PsyI GACNNNGTC 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 296
RruI TCGCGA 1 cut(s) 408
RsaI GTAC 2 cut(s) 283, 432
RsaNI GTAC 2 cut(s) 282, 431
SaqAI TTAA 2 cut(s) 462, 498
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 409, 490
Sau96I GGNCC 3 cut(s) 14, 38, 508
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 2 cut(s) 89, 299
SduI GDGCHC 1 cut(s) 453
SetI ASST 3 cut(s) 30, 298, 417
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 161
SinI GGWCC 2 cut(s) 14, 38
SmlI CTYRAG 2 cut(s) 285, 452
SmoI CTYRAG 2 cut(s) 285, 452
Sse9I AATT 1 cut(s) 306
SsiI CCGC 5 cut(s) 32, 317, 389, 439, 484
SspMI CTAG 3 cut(s) 84, 195, 314
TaaI ACNGT 2 cut(s) 165, 277
TaiI ACGT 1 cut(s) 30
TasI AATT 1 cut(s) 306
TatI WGTACW 2 cut(s) 281, 430
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 462, 498
Tru9I TTAA 2 cut(s) 462, 498
TscAI CASTG 2 cut(s) 14, 77
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 2 cut(s) 14, 77
Tth111I GACNNNGTC 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 14, 38
XbaI TCTAGA 2 cut(s) 83, 194
XceI RCATGY 1 cut(s) 469
XspI CTAG 3 cut(s) 84, 195, 314
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.