Rmu_sc0001348.1_g000044

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001348.1
Physical Location & Seq
Forward (+)
140218 .. 140613
396 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
atgtctggtcataatcgaccaaccaagaaagcaaaaactcttgattcatggctcaagaaaataagagaaaatcagaatagcaatacaccccttgcatctaatgagcatcatcatgttagttctcctatactcgagcctgaagagtttgttcctactactcctgcatccaatatttatagtacaatactcaatgagcatcatcatgtcacatctccaataccaaagcctaaagaatctgttcctattattcattcaacacgtagagattctattcctactcctcccgcatccagtactaatagtgcagtactcaatgagcaacctcatgtcacatctctgactcttgaagatatagattttattgttggtgatttggaacgaaatccagggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.53

Weight (kDa)

6.49

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025507)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 3 cut(s) 181, 295, 309
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 255, 347
AjnI CCWGG 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 387
BmcAI AGTACT 2 cut(s) 295, 309
Bme1390I CCNGG 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 5 cut(s) 104, 115, 173, 205, 296
BpuEI CTTGAG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 164, 287
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 131
BspACI CCGC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 260
BstF5I GGATG 2 cut(s) 164, 287
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 385
BtsCI GGATG 2 cut(s) 164, 287
Csp6I GTAC 3 cut(s) 180, 294, 308
CviAII CATG 4 cut(s) 48, 113, 203, 326
CviJI RGCY 3 cut(s) 52, 136, 226
CviKI_1 RGCY 3 cut(s) 52, 136, 226
CviQI GTAC 3 cut(s) 180, 294, 308
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 385
FaeI CATG 4 cut(s) 51, 116, 206, 329
FaiI YATR 8 cut(s) 12, 49, 114, 128, 177, 204, 327, 353
FatI CATG 4 cut(s) 47, 112, 202, 325
FauI CCCGC 1 cut(s) 292
FokI GGATG 2 cut(s) 151, 274
Hin1II CATG 4 cut(s) 51, 116, 206, 329
HinfI GANTC 4 cut(s) 44, 233, 266, 340
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 2 cut(s) 75, 339
Hpy188III TCNNGA 3 cut(s) 41, 55, 344
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 95, 164, 305
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 4 cut(s) 51, 116, 206, 329
LpnPI CCDG 4 cut(s) 150, 174, 304, 372
LweI GCATC 5 cut(s) 104, 115, 173, 205, 296
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 2 cut(s) 205, 328
MboII GAAGA 2 cut(s) 152, 359
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 2 cut(s) 291, 333
MroXI GAANNNNTTC 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 111, 201
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
NlaIII CATG 4 cut(s) 51, 116, 206, 329
NmuCI GTSAC 2 cut(s) 205, 328
PaeR7I CTCGAG 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 3 cut(s) 44, 233, 266
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 131
RsaI GTAC 3 cut(s) 181, 295, 309
RsaNI GTAC 3 cut(s) 180, 294, 308
RseI CAYNNNNRTG 2 cut(s) 111, 201
ScaI AGTACT 2 cut(s) 295, 309
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 387
SetI ASST 2 cut(s) 262, 325
SfaNI GCATC 5 cut(s) 104, 115, 173, 205, 296
Sfr274I CTCGAG 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 111, 201
SmlI CTYRAG 2 cut(s) 53, 131
SmoI CTYRAG 2 cut(s) 53, 131
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 385
TaiI ACGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 16, 132
TatI WGTACW 3 cut(s) 179, 293, 307
TfiI GAWTC 3 cut(s) 44, 233, 266
TseFI GTSAC 2 cut(s) 205, 328
Tsp45I GTSAC 2 cut(s) 205, 328
TspDTI ATGAA 2 cut(s) 36, 239
XhoI CTCGAG 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 237
ZrmI AGTACT 2 cut(s) 295, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.