Rmu_sc0001526.1_g000004

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001526.1
Physical Location & Seq
Reverse (-)
14828 .. 15223
396 bp
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UTR
Exon/CDS
Intron
Rmu_sc0001526.1_g000004.1.cds

Sequence Viewer

Length: 396 bp
atgtctggtcataatcgaccaaccaagaaagcaaaaactcttgattcatggctcaagaaaataagagaagttcagaatagcaatacaccccttgcatctaatgagcatcatcatgttagttctcctatacttgagcctggagagtttgttcctactactcctgcatccaatagtgatagtacaatactcaatgagcatcatcatgtcacatcttcaataccagagcctaaagaatctgttcctattattgattcaacacgtagagattctattcctactcctcctgcatccagtactgatagtgcagtactcaatgagcaacctcatgtcacatctctaactcttgaagatatagattttattgttggtgatttggaacgaaatccagggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.34

Weight (kDa)

5.69

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025507)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 181, 295, 309
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 3 cut(s) 216, 255, 347
AjnI CCWGG 2 cut(s) 136, 385
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
Asp700I GAANNNNTTC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 138, 387
BmcAI AGTACT 2 cut(s) 295, 309
Bme1390I CCNGG 2 cut(s) 138, 387
BmrFI CCNGG 2 cut(s) 138, 387
BmsI GCATC 5 cut(s) 104, 115, 173, 205, 296
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 38, 152
BsaAI YACGTR 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 2 cut(s) 138, 387
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 164, 287
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 324
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 386
Bst2UI CCWGG 2 cut(s) 138, 387
BstBAI YACGTR 1 cut(s) 260
BstF5I GGATG 2 cut(s) 164, 287
BstNI CCWGG 2 cut(s) 138, 387
BstSCI CCNGG 2 cut(s) 136, 385
BtsCI GGATG 2 cut(s) 164, 287
Csp6I GTAC 3 cut(s) 180, 294, 308
CviAII CATG 4 cut(s) 48, 113, 203, 326
CviJI RGCY 3 cut(s) 52, 136, 226
CviKI_1 RGCY 3 cut(s) 52, 136, 226
CviQI GTAC 3 cut(s) 180, 294, 308
EcoRII CCWGG 2 cut(s) 136, 385
FaeI CATG 4 cut(s) 51, 116, 206, 329
FaiI YATR 7 cut(s) 12, 49, 114, 128, 204, 327, 353
FatI CATG 4 cut(s) 47, 112, 202, 325
FokI GGATG 2 cut(s) 151, 274
GsuI CTGGAG 1 cut(s) 159
Hin1II CATG 4 cut(s) 51, 116, 206, 329
HinfI GANTC 4 cut(s) 44, 233, 251, 266
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 41, 55, 344
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 95, 164, 287, 305
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 4 cut(s) 51, 116, 206, 329
LpnPI CCDG 7 cut(s) 123, 150, 174, 234, 297, 304, 372
LweI GCATC 5 cut(s) 104, 115, 173, 205, 296
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 2 cut(s) 205, 328
MboII GAAGA 2 cut(s) 204, 359
MnlI CCTC 2 cut(s) 291, 333
MroXI GAANNNNTTC 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 111, 201
MspR9I CCNGG 2 cut(s) 138, 387
MvaI CCWGG 2 cut(s) 138, 387
NlaIII CATG 4 cut(s) 51, 116, 206, 329
NmuCI GTSAC 2 cut(s) 205, 328
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 4 cut(s) 44, 233, 251, 266
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 136, 385
PspGI CCWGG 2 cut(s) 136, 385
RsaI GTAC 3 cut(s) 181, 295, 309
RsaNI GTAC 3 cut(s) 180, 294, 308
RseI CAYNNNNRTG 2 cut(s) 111, 201
ScaI AGTACT 2 cut(s) 295, 309
ScrFI CCNGG 2 cut(s) 138, 387
SetI ASST 2 cut(s) 262, 325
SfaNI GCATC 5 cut(s) 104, 115, 173, 205, 296
SmiMI CAYNNNNRTG 2 cut(s) 111, 201
SmlI CTYRAG 2 cut(s) 53, 131
SmoI CTYRAG 2 cut(s) 53, 131
StyD4I CCNGG 2 cut(s) 136, 385
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 16
TatI WGTACW 3 cut(s) 179, 293, 307
TfiI GAWTC 4 cut(s) 44, 233, 251, 266
TseFI GTSAC 2 cut(s) 205, 328
Tsp45I GTSAC 2 cut(s) 205, 328
TspDTI ATGAA 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 237
ZrmI AGTACT 2 cut(s) 295, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.