Rmu_sc0002868.1_g000023

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002868.1
Physical Location & Seq
Reverse (-)
56833 .. 57147
315 bp
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UTR
Exon/CDS
Intron
Rmu_sc0002868.1_g000023.1.cds

Sequence Viewer

Length: 315 bp
atgtctgatcataatcgacaaaccaagaaagcaaaaactcttgattcatggctcaagaaaataagagaagatcagaatagcagtgtaattcttgcatctaatgagcatcatcatgtcagttctcctatactcaagcctagagaattcgttcctactgctcctgcacccaatactgatagtacaatacttaatgagcatcatgatgtcacttcttctatacttgagcctcaagagtttgctcctgctgctcctgcatccaatattgatagtataatactcaatgagcatcatcatgtcacatctccaatatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

6.1

Isoelectric Point (pI)

66.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025507)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 232
BclI TGATCA 1 cut(s) 7
BfaI CTAG 1 cut(s) 138
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmsI GCATC 5 cut(s) 104, 115, 205, 263, 295
BpuEI CTTGAG 4 cut(s) 38, 116, 213, 242
BsaBI GATNNNNATC 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 12
BseGI GGATG 1 cut(s) 254
BseJI GATNNNNATC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 147
Bsp143I GATC 2 cut(s) 7, 70
BspHI TCATGA 1 cut(s) 199
BssMI GATC 2 cut(s) 7, 70
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 2 cut(s) 10, 73
BstMBI GATC 2 cut(s) 7, 70
BstMWI GCNNNNNNNGC 2 cut(s) 245, 251
BstV1I GCAGC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 88
CciI TCATGA 1 cut(s) 199
Csp6I GTAC 1 cut(s) 180
CviAII CATG 4 cut(s) 48, 113, 200, 293
CviJI RGCY 3 cut(s) 52, 136, 226
CviKI_1 RGCY 3 cut(s) 52, 136, 226
CviQI GTAC 1 cut(s) 180
DpnI GATC 2 cut(s) 9, 72
DpnII GATC 2 cut(s) 7, 70
EcoRI GAATTC 1 cut(s) 143
FaeI CATG 4 cut(s) 51, 116, 203, 296
FaiI YATR 9 cut(s) 12, 49, 114, 128, 201, 218, 272, 294, 313
FatI CATG 4 cut(s) 47, 112, 199, 292
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 51, 116, 203, 296
HinfI GANTC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 7, 75
Hpy188III TCNNGA 4 cut(s) 41, 55, 200, 230
HpyCH4V TGCA 3 cut(s) 95, 164, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 251
Hsp92II CATG 4 cut(s) 51, 116, 203, 296
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 2 cut(s) 7, 70
LmnI GCTCC 3 cut(s) 163, 244, 253
LpnPI CCDG 3 cut(s) 174, 255, 264
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 5 cut(s) 104, 115, 205, 263, 295
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 205, 295
MalI GATC 2 cut(s) 9, 72
MboI GATC 2 cut(s) 7, 70
MboII GAAGA 2 cut(s) 80, 204
MluCI AATT 2 cut(s) 87, 143
MnlI CCTC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 3 cut(s) 111, 201, 291
MwoI GCNNNNNNNGC 2 cut(s) 245, 251
NdeII GATC 2 cut(s) 7, 70
NlaIII CATG 4 cut(s) 51, 116, 203, 296
NmuCI GTSAC 2 cut(s) 205, 295
PagI TCATGA 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 247
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 3 cut(s) 111, 201, 291
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 7, 70
SfaNI GCATC 5 cut(s) 104, 115, 205, 263, 295
SmiMI CAYNNNNRTG 3 cut(s) 111, 201, 291
SmlI CTYRAG 4 cut(s) 53, 131, 221, 228
SmoI CTYRAG 4 cut(s) 53, 131, 221, 228
Sse9I AATT 2 cut(s) 87, 143
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 138
TaqI TCGA 1 cut(s) 16
TasI AATT 2 cut(s) 87, 143
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 205, 295
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 2 cut(s) 205, 295
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 88
XapI RAATTY 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.