Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001366.1

Orthogroup ID

OG0023065

Physical Location & Seq

Genomic Coordinates Forward (+)

92314 .. 95562

Gene Structure 3249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggccccagctaggatgcgtgggaggcccgtggattcgaaggatacttcggcacattccaatcctttgatcatcaagactcaaaatcggtctcatgataatcttcaagtcgtcgccgtcgatctctcgatctcgatctccagtctcaagtctcaacctctctctccagtctcgatcaagttgcttctgagttctgattatccgcttgttactgaagacggtgagtcaacttgggctttgacttttattgatcatactagcaacattggatggaaagagtaccaaagagccaagcccttaattgtggatcctgggttgtatatgacaaagaaggctgatgtgttttgggttacgcagcgccggagtgtgccaacaggtttcaagctttttacagatgcaggactttggaatatgaagtttatagcttatactcctttcaaatcttggtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009826 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0015020 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032989 GO:0034097 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0060560 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

150

Amino Acids

16.9

Weight (kDa)

9.56

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	64 - 131	1.4e-06	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0023065)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001366.1_g000028
rosa_roxburghii	Rroxscaffold_3G00249340
rosa_samantha	Rh1AG065500 Rh5DG426500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	302, 315
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	107, 382, 439
AhdI	GACNNNNNGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	3 cut(s)	11, 385, 425
AluI	AGCT	3 cut(s)	11, 385, 425
Alw26I	GTCTC	4 cut(s)	96, 149, 156, 175
AlwI	GGATC	2 cut(s)	302, 315
AoxI	GGCC	2 cut(s)	3, 26
ApeKI	GCWGC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	4, 27
AsuHPI	GGTGA	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	37
BclI	TGATCA	2 cut(s)	69, 250
BcoDI	GTCTC	4 cut(s)	96, 149, 156, 175
BfaI	CTAG	2 cut(s)	12, 258
BfoI	RGCGCY	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	312
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	4, 27
BmiI	GGNNCC	2 cut(s)	6, 309
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	6, 385
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	124, 150
Bpu14I	TTCGAA	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	30, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	141, 167
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	30, 311
BseGI	GGATG	2 cut(s)	21, 275
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	2 cut(s)	141, 167
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	2 cut(s)	5, 28
BsiSI	CCGG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	4 cut(s)	96, 149, 156, 175
BsnI	GGCC	2 cut(s)	5, 28
Bso31I	GGTCTC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	38
Bsp143I	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	2 cut(s)	5, 28
BspCNI	CTCAG	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	6, 309
BspPI	GGATC	2 cut(s)	302, 315
BspT104I	TTCGAA	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	141, 167
BssECI	CCNNGG	2 cut(s)	30, 311
BssMI	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	21, 275
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	7 cut(s)	72, 124, 132, 138, 177, 253, 310
BstMAI	GTCTC	4 cut(s)	96, 149, 156, 175
BstMBI	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	5, 28
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	21, 275
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	4, 27
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	9 cut(s)	5, 11, 28, 236, 290, 295, 335, 385, 425
CviKI_1	RGCY	9 cut(s)	5, 11, 28, 236, 290, 295, 335, 385, 425
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	7 cut(s)	71, 123, 131, 137, 176, 252, 309
DpnII	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
DriI	GACNNNNNGTC	1 cut(s)	223
Eam1105I	GACNNNNNGTC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	310
FaeI	CATG	1 cut(s)	98
FaiI	YATR	8 cut(s)	96, 255, 321, 323, 413, 422, 429, 451
FatI	CATG	1 cut(s)	94
FbaI	TGATCA	2 cut(s)	69, 250
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	2 cut(s)	28, 282
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	2 cut(s)	12, 258
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	11
GsuI	CTGGAG	2 cut(s)	124, 150
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	5, 28
HapII	CCGG	1 cut(s)	361
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	3 cut(s)	35, 79, 224
HpaII	CCGG	1 cut(s)	361
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	189, 196
Hpy188III	TCNNGA	5 cut(s)	76, 95, 127, 133, 172
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	2 cut(s)	116, 122
HpyAV	CCTTC	2 cut(s)	34, 325
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	358
Ksp22I	TGATCA	2 cut(s)	69, 250
Kzo9I	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
LpnPI	CCDG	8 cut(s)	21, 154, 180, 297, 324, 360, 374, 384
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	6, 385
MaeI	CTAG	2 cut(s)	12, 258
MaeIII	GTNAC	2 cut(s)	208, 349
MalI	GATC	7 cut(s)	71, 123, 131, 137, 176, 252, 309
MboI	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
MboII	GAAGA	2 cut(s)	95, 227
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	73, 233
MnlI	CCTC	2 cut(s)	18, 168
MseI	TTAA	1 cut(s)	299
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	6, 309
NspV	TTCGAA	1 cut(s)	38
PagI	TCATGA	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	2 cut(s)	73, 232
PpsI	GAGTC	2 cut(s)	73, 232
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	6, 309
PspPI	GGNCC	2 cut(s)	4, 27
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	7 cut(s)	69, 121, 129, 135, 174, 250, 307
Sau96I	GGNCC	2 cut(s)	4, 27
SchI	GAGTC	2 cut(s)	73, 233
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	5 cut(s)	13, 160, 379, 387, 427
SfaNI	GCATC	2 cut(s)	6, 385
SfuI	TTCGAA	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	12, 258
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	5 cut(s)	38, 120, 128, 134, 173
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	428
XspI	CTAG	2 cut(s)	12, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.