Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0023065

Physical Location & Seq

Genomic Coordinates Forward (+)

10931221 .. 10964267

Gene Structure 33047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG065500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCACAACTCACCTGCAAAGCAGCTTTACTTTATCATATTTCGATCTTTCATGACCTCAGGTACCAAAGAGCCAAGCCCTTAATTGTTGATCCTGGGTTGTATATGACAAAGAAGGCTGATGTGTTTTGGGTTACGCAGCGCCGGAGTGTGCCAACAGCTTTCAAGCTTTTTACAGCCCTCACCGTCTCAACCATTTTTGACTCCGACAAGGCTTCCTCGCTTCCAACGCCTTTGCTCCGTTTCCAATTCGCCACTCTCCCTGTCCAACGATCTACACGTCAAGCCGTCTCTACTCTCCATAACCGTTCTCACGGAGTCCGTTTCGTGTTCCGGCGTCGGCGTGCACTGAGAACCTTCTTAGGAAGAGGAAACGCGTCGTTTTGGAATGCGGACATCTCCAGCCTCGTCGATCAACTCCAGGAGAAGCTCGGCGTTTCCGTCGCAGCTCTCGTTCCTGCCGGTCTCCCTACGAAGCCTACCATCATGTTGATGATGGAGATTCTAAGATGGCCAAAACAAGGCAATAGGACTTCTTCAAATAACTACATGCCTGTAGCTGGCCAAAACACTGGAAACTTCATTACGAGATATAACAAGCATGCAAAAAGTGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009826 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0015020 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032989 GO:0034097 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0060560 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

206

Amino Acids

23.25

Weight (kDa)

11.27

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023065)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001366.1_g000028
rosa_roxburghii	Rroxscaffold_3G00249340
rosa_samantha	Rh1AG065500 Rh5DG426500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	23
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	63
AccII	CGCG	1 cut(s)	377
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	2 cut(s)	512, 562
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	521, 560
AflIII	ACRYGT	2 cut(s)	278, 375
AgsI	TTSAA	2 cut(s)	166, 540
AjiI	CACGTC	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	94, 420
AluBI	AGCT	6 cut(s)	26, 161, 169, 430, 449, 560
AluI	AGCT	6 cut(s)	26, 161, 169, 430, 449, 560
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	3 cut(s)	193, 295, 470
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	512, 562
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	23, 139, 446
Asp718I	GGTACC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	4, 175
AxyI	CCTNAGG	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	349
BalI	TGGCCA	2 cut(s)	514, 564
BanI	GGYRCC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	35, 151, 458
BccI	CCATC	3 cut(s)	490, 491, 504
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	96, 422
BcoDI	GTCTC	3 cut(s)	193, 295, 470
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	23
BisI	GCNGC	3 cut(s)	24, 140, 447
BlsI	GCNGC	3 cut(s)	25, 141, 448
Bme1390I	CCNGG	2 cut(s)	96, 422
BmgBI	CACGTC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	96, 422
BpmI	CTGGAG	2 cut(s)	385, 404
BsaHI	GRCGYC	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 560
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	577
Bse21I	CCTNAGG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	96, 422
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	521, 560
BseMII	CTCAG	2 cut(s)	73, 341
BseNI	ACTGG	1 cut(s)	577
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	35, 151, 458
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	514, 564
BshNI	GGYRCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	3 cut(s)	145, 334, 462
BslI	CCNNNNNNNGG	2 cut(s)	521, 560
BsmAI	GTCTC	3 cut(s)	193, 295, 470
BsmBI	CGTCTC	2 cut(s)	193, 295
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	514, 564
Bso31I	GGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	45, 91, 272, 412
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	2 cut(s)	514, 564
BspCNI	CTCAG	2 cut(s)	72, 342
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	2 cut(s)	52, 617
BspLI	GGNNCC	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	4 cut(s)	45, 91, 272, 412
BssNI	GRCGYC	1 cut(s)	337
Bst2UI	CCWGG	2 cut(s)	96, 422
Bst4CI	ACNGT	2 cut(s)	187, 308
Bst6I	CTCTTC	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	345, 562, 603
BstDEI	CTNAG	4 cut(s)	59, 350, 361, 506
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	4 cut(s)	48, 94, 275, 415
BstMAI	GTCTC	3 cut(s)	193, 295, 470
BstMBI	GATC	4 cut(s)	45, 91, 272, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	2 cut(s)	96, 422
BstNSI	RCATGY	2 cut(s)	553, 605
BstSCI	CCNGG	2 cut(s)	94, 420
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	35, 151, 458
BstXI	CCANNNNNNTGG	1 cut(s)	572
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	514, 564
BtrI	CACGTC	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	347, 570
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	3 cut(s)	345, 562, 603
CciI	TCATGA	2 cut(s)	52, 617
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	461
CseI	GACGC	2 cut(s)	326, 366
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	5 cut(s)	53, 487, 550, 602, 618
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	4 cut(s)	59, 350, 361, 506
DpnI	GATC	4 cut(s)	47, 93, 274, 414
DpnII	GATC	4 cut(s)	45, 91, 272, 412
EaeI	YGGCCR	2 cut(s)	512, 562
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	94, 420
Esp3I	CGTCTC	2 cut(s)	193, 295
FaeI	CATG	5 cut(s)	56, 490, 553, 605, 621
FatI	CATG	5 cut(s)	52, 486, 549, 601, 617
Fnu4HI	GCNGC	3 cut(s)	24, 140, 447
Fsp4HI	GCNGC	3 cut(s)	24, 140, 447
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	3 cut(s)	24, 140, 447
GsuI	CTGGAG	2 cut(s)	385, 404
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	514, 564
HapII	CCGG	3 cut(s)	145, 334, 462
HgaI	GACGC	2 cut(s)	326, 366
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	5 cut(s)	56, 490, 553, 605, 621
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	203, 318, 502
HpaII	CCGG	3 cut(s)	145, 334, 462
HphI	GGTGA	2 cut(s)	4, 175
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	53, 618
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	4 cut(s)	342, 382, 413, 446
HpyAV	CCTTC	2 cut(s)	109, 367
HpyCH4III	ACNGT	2 cut(s)	187, 308
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	18, 347, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	4 cut(s)	59, 350, 361, 506
HpySE526I	ACGT	1 cut(s)	280
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	5 cut(s)	56, 490, 553, 605, 621
HspAI	GCGC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	45, 91, 272, 412
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	3 cut(s)	35, 151, 458
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	4 cut(s)	47, 93, 274, 414
MboI	GATC	4 cut(s)	45, 91, 272, 412
MboII	GAAGA	2 cut(s)	378, 528
MhlI	GDGCHC	1 cut(s)	349
MlsI	TGGCCA	2 cut(s)	514, 564
MluCI	AATT	2 cut(s)	84, 248
MluI	ACGCGT	1 cut(s)	375
MluNI	TGGCCA	2 cut(s)	514, 564
MlyI	GAGTC	2 cut(s)	197, 327
MmeI	TCCRAC	3 cut(s)	231, 251, 292
MnlI	CCTC	5 cut(s)	68, 191, 229, 362, 416
Mox20I	TGGCCA	2 cut(s)	514, 564
MscI	TGGCCA	2 cut(s)	514, 564
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	2 cut(s)	514, 564
MspI	CCGG	3 cut(s)	145, 334, 462
MspR9I	CCNGG	2 cut(s)	96, 422
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	96, 422
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	4 cut(s)	45, 91, 272, 412
NlaIII	CATG	5 cut(s)	56, 490, 553, 605, 621
NlaIV	GGNNCC	1 cut(s)	65
NmeAIII	GCCGAG	1 cut(s)	411
NspI	RCATGY	2 cut(s)	553, 605
PaeI	GCATGC	1 cut(s)	605
PagI	TCATGA	2 cut(s)	52, 617
PaqCI	CACCTGC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	3 cut(s)	277, 438, 450
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	502
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	25, 141, 448
PleI	GAGTC	2 cut(s)	197, 326
PpsI	GAGTC	2 cut(s)	197, 326
Psp6I	CCWGG	2 cut(s)	94, 420
PspGI	CCWGG	2 cut(s)	94, 420
PspN4I	GGNNCC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	3 cut(s)	24, 140, 447
Sau3AI	GATC	4 cut(s)	45, 91, 272, 412
SchI	GAGTC	2 cut(s)	197, 327
ScrFI	CCNGG	2 cut(s)	96, 422
SduI	GDGCHC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	2 cut(s)	84, 248
SsiI	CCGC	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	94, 420
TaaI	ACNGT	2 cut(s)	187, 308
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	44, 411
TasI	AATT	2 cut(s)	84, 248
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	2 cut(s)	354, 577
TseI	GCWGC	3 cut(s)	23, 139, 446
TspDTI	ATGAA	3 cut(s)	41, 571, 606
TspGWI	ACGGA	4 cut(s)	230, 311, 330, 430
TspRI	CASTG	2 cut(s)	354, 577
VneI	GTGCAC	1 cut(s)	345
XceI	RCATGY	2 cut(s)	553, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.