Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0023065

Physical Location & Seq

Genomic Coordinates Reverse (-)

68039124 .. 68040758

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG426500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCCATCGATACTCGATAGTTCGATACCAAAGTACCAAAGAGCCAAGCCCTTAATTGTGGATCCTGGGTTGTATATGACAAAGAAGGCTGATGTGTTTTGGGTTACGCAGCGCCGGAGTGTGCCAACAGGTTTCAAGCTTTTTACAGACTTACAGAAAAGAGCTGCAAAGAGTGGAGAGTTGCCAAATGGGAATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009826 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0015020 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032989 GO:0034097 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0060560 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

66

Amino Acids

7.37

Weight (kDa)

10.09

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023065)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001366.1_g000028
rosa_roxburghii	Rroxscaffold_3G00249340
rosa_samantha	Rh1AG065500 Rh5DG426500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	56, 69
AfaI	GTAC	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	2 cut(s)	139, 164
AluI	AGCT	2 cut(s)	139, 164
AlwI	GGATC	2 cut(s)	56, 69
ApeKI	GCWGC	2 cut(s)	109, 164
AspLEI	GCGC	1 cut(s)	114
BaeI	ACNNNNGTAYC	4 cut(s)	17, 17, 50, 50
BamHI	GGATCC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	121, 151
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	2 cut(s)	110, 165
BlsI	GCNGC	2 cut(s)	111, 166
Bme1390I	CCNGG	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	121, 151
BshVI	ATCGAT	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	56, 69
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	121, 151
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	8
CfoI	GCGC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	5 cut(s)	44, 49, 89, 139, 164
CviKI_1	RGCY	5 cut(s)	44, 49, 89, 139, 164
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	64
FaiI	YATR	2 cut(s)	75, 77
Fnu4HI	GCNGC	2 cut(s)	110, 165
Fsp4HI	GCNGC	2 cut(s)	110, 165
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	110, 165
HaeII	RGCGCY	1 cut(s)	115
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	137
HpaII	CCGG	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	167
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	51, 78, 114, 128
Lsp1109I	GCAGC	2 cut(s)	121, 151
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	1 cut(s)	54
MseI	TTAA	1 cut(s)	53
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	111, 166
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	2 cut(s)	110, 165
Sau3AI	GATC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	3 cut(s)	133, 141, 166
SgeI	CNNG	7 cut(s)	26, 58, 77, 78, 127, 141, 148
Sse9I	AATT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	64
TaqI	TCGA	3 cut(s)	8, 15, 23
TasI	AATT	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TseI	GCWGC	2 cut(s)	109, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.