Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001410.1

Orthogroup ID

OG0031131

Physical Location & Seq

Genomic Coordinates Reverse (-)

24725 .. 25944

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001410.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggctatcttagcgaaaatctaccctgtggaagaagtcgataatgatgaactgaaggccttgcatgaatccgtcgactttgaaaagtctgaggaaggagctattgggaaaagtatgatggaaaaagtactaaagagtgctttcggcaacaccgtggtccgaagaggactcaatgcagggatcacaatccaagtcgcgcagcaatttgtgggtatcaacactgtaatttattacagcccaaacatcgttcaatttgctggattcacatctaaccaaacagctatggcacttcctctcatcacttctggcctcaatgtgctggccccaggagtcaatgccatgaagaacatagggtatggtactctaaagggtgtcctagcaaaattgagatatatatatccattgagatacagaggaactggtggagggattgccgcagtttccaactggactgcaaatctcattgtgagtgagacatacttaaccctcactaaggaactaggttcagctggaaccttcctcctatttgttggattttttgccatcggacttgtattcatttacttgccggttcctgaaaccaaaggaatgcaattcgaagaggtcgagaaattgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

206

Amino Acids

22.34

Weight (kDa)

6.61

Isoelectric Point (pI)

22.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031131)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001410.1_g000005
rosa_samantha	Rh4DG255700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	197
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	129, 361
AfiI	CCNNNNNNNGG	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	83, 251
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	3 cut(s)	101, 281, 509
AluI	AGCT	3 cut(s)	101, 281, 509
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	3 cut(s)	57, 307, 321
ApeKI	GCWGC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	157, 322
AsuII	TTCGAA	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	112, 551
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	3 cut(s)	377, 500, 619
BisI	GCNGC	2 cut(s)	200, 435
BlsI	GCNGC	2 cut(s)	201, 436
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	157, 322
BmiI	GGNNCC	3 cut(s)	324, 514, 573
BmrFI	CCNGG	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	597
BsaBI	GATNNNNATC	2 cut(s)	185, 265
BsaJI	CCNNGG	2 cut(s)	153, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	424, 452
Bse8I	GATNNNNATC	2 cut(s)	185, 265
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	153, 325
BseJI	GATNNNNATC	2 cut(s)	185, 265
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	424, 452
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	3 cut(s)	59, 309, 323
BsiSI	CCGG	1 cut(s)	569
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	594
BsnI	GGCC	3 cut(s)	59, 309, 323
Bsp119I	TTCGAA	1 cut(s)	597
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	3 cut(s)	59, 309, 323
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	324, 514, 573
BspPI	GGATC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	424, 452
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	153, 325
BssMI	GATC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	154, 223
Bst6I	CTCTTC	2 cut(s)	157, 594
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	10, 90, 492
BstDSI	CCRYGG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	59, 309, 323
BtgI	CCRYGG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	157, 322
Csp6I	GTAC	2 cut(s)	128, 360
CviAII	CATG	2 cut(s)	65, 340
CviJI	RGCY	8 cut(s)	5, 59, 101, 237, 281, 309, 323, 509
CviKI_1	RGCY	8 cut(s)	5, 59, 101, 237, 281, 309, 323, 509
CviQI	GTAC	2 cut(s)	128, 360
DdeI	CTNAG	3 cut(s)	10, 90, 492
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	157, 594
EarI	CTCTTC	2 cut(s)	157, 594
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	74
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	2 cut(s)	68, 343
FatI	CATG	2 cut(s)	64, 339
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	200, 435
Fsp4HI	GCNGC	2 cut(s)	200, 435
FspBI	CTAG	3 cut(s)	377, 500, 619
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	2 cut(s)	200, 435
HaeIII	GGCC	3 cut(s)	59, 309, 323
HapII	CCGG	1 cut(s)	569
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	68, 343
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	68, 168, 261, 330
HpaII	CCGG	1 cut(s)	569
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	91, 161, 548
Hpy188III	TCNNGA	2 cut(s)	575, 607
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	49, 89, 526
HpyCH4III	ACNGT	2 cut(s)	154, 223
HpyCH4V	TGCA	4 cut(s)	64, 176, 455, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	10, 90, 492
Hsp92II	CATG	2 cut(s)	68, 343
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	1 cut(s)	211
MaeI	CTAG	3 cut(s)	377, 500, 619
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	4 cut(s)	44, 174, 355, 611
MluCI	AATT	6 cut(s)	203, 225, 251, 383, 593, 611
MlyI	GAGTC	2 cut(s)	162, 339
MmeI	TCCRAC	2 cut(s)	468, 511
MnlI	CCTC	9 cut(s)	85, 158, 303, 320, 407, 419, 497, 530, 595
MseI	TTAA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	68, 343
NlaIV	GGNNCC	3 cut(s)	324, 514, 573
NspV	TTCGAA	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 603
PctI	GAATGC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	68, 261
PkrI	GCNGC	2 cut(s)	201, 436
PleI	GAGTC	2 cut(s)	162, 338
PpsI	GAGTC	2 cut(s)	162, 338
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	324, 514, 573
PspPI	GGNCC	2 cut(s)	157, 322
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	129, 361
RsaNI	GTAC	2 cut(s)	128, 360
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	2 cut(s)	200, 435
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	157, 322
ScaI	AGTACT	1 cut(s)	129
SchI	GAGTC	2 cut(s)	162, 339
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	6 cut(s)	103, 283, 505, 511, 518, 606
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	6 cut(s)	203, 225, 251, 383, 593, 611
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	3 cut(s)	377, 500, 619
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	154, 223
TaqI	TCGA	4 cut(s)	39, 75, 597, 606
TasI	AATT	6 cut(s)	203, 225, 251, 383, 593, 611
TatI	WGTACW	1 cut(s)	127
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	2 cut(s)	68, 261
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	4 cut(s)	63, 81, 356, 547
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	3 cut(s)	377, 500, 619
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.