Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0031131

Physical Location & Seq

Genomic Coordinates Forward (+)

47125693 .. 47127449

Gene Structure 1757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG255700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGAGTGGCTCCTGTTCCTTGGGTGATCATCATTGGAAGAAAAAGAATCATAGTTGGTTTGGGAGTTGGAATGGCTTCCATGACCGCGCCCCTCTACATTTCAGAGACTTCTCCTCATAGAATCAGAGGAGCTCTTGTTAGTACAGACGGTCTTGTCATCACAGGAGGTCAGTTTTTGTCATACCTCATCAATCTGAACAAGGTAGATGAAGCTAGGGCTATCTTAGCGAAAATCTACCCTGTGGAAGAAGTCGATAATGATGAACTGAAGGCCTTGCATGAATCCGTCGACTTTGAAAAGTCTGAGGAAGGAGCTATTGGGAAAAGTATGATGGAAAAACTAAAGAGTGCTTTCGGCAACACCGTGGTCCGAAGAGGACTCAATGCAGGGATCACAATCCAAGTCGCGCAGCAATTTGTGGGTATCAACACTGTAATTTATTACAGCCCAACTATCGTTCAATTTGCTGGATTCACATCTAACCAAACGGCTATGGCACTTCCTCTCATCACTTCTGGCCTCAATGTGGTCGGCACACTCATCAGCATGTGCTTTGTGGATAAATGCGGAAGGAGAAGGCTCATGATCATTTCCATGTTCGGAATCATCAGTTGCCTCATCGTGTTAGCTGGAGTATTCTTCTATGCCGCAGCTCATTCTCCAACTATTAGCCACTTCACCACTTGGAATCCAATCACTTTGCTGGCCCCAGGAGTCAATGCCATGAAGAACATAGGGTATGGTACTCTAAAGGGTGTCCTAGCAAAATTGAGGTATATATATCCATTGAGATACAGAGGCACTGGTGGAGGGATTGCCGCAGTTTCCAACTGGACTGCAAATCTCATTGTGAGTGAGACATACTTAACCCTCACTAAGGAACTAGGTTCAGCTGGAACCTTCCTCCTATTTGTTGGATTTTTTGCCATCGGACTTGTATTCATTTACTTGCTGGTTCCTGAAACCAAAGGAATGCAATTCGAAGAGGTCGAGAAATTGCTCCAGAAGGGTTTCCGACCCAAGTTATTTGGTCCGAAGGATGTAAAACTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

352

Amino Acids

38.26

Weight (kDa)

9.5

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	6 - 66	2.3e-16	Sugar (and other) transporter
Sugar_tr	PF00083	62 - 334	5.1e-47	Sugar (and other) transporter
MFS_1	PF07690	100 - 218	1.2e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031131)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001410.1_g000005
rosa_samantha	Rh4DG255700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	2 cut(s)	89, 410
AciI	CCGC	4 cut(s)	87, 570, 651, 822
AclWI	GGATC	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	145, 748
AfiI	CCNNNNNNNGG	2 cut(s)	529, 880
AgsI	TTSAA	2 cut(s)	299, 464
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	6 cut(s)	134, 215, 317, 632, 656, 896
AluI	AGCT	6 cut(s)	134, 215, 317, 632, 656, 896
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	101, 854
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	3 cut(s)	273, 520, 708
ApeKI	GCWGC	2 cut(s)	412, 653
Asp700I	GAANNNNTTC	2 cut(s)	76, 1013
AspLEI	GCGC	2 cut(s)	91, 412
AspS9I	GGNCC	3 cut(s)	370, 709, 1034
AsuHPI	GGTGA	2 cut(s)	37, 673
AsuII	TTCGAA	1 cut(s)	984
AvaII	GGWCC	2 cut(s)	370, 1034
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	424, 665
BccI	CCATC	2 cut(s)	328, 938
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	2 cut(s)	27, 588
BcoDI	GTCTC	2 cut(s)	101, 854
BfaI	CTAG	3 cut(s)	216, 764, 887
BisI	GCNGC	4 cut(s)	413, 651, 654, 822
BlsI	GCNGC	4 cut(s)	414, 652, 655, 823
Bme1390I	CCNGG	1 cut(s)	714
Bme18I	GGWCC	2 cut(s)	370, 1034
BmgT120I	GGNCC	3 cut(s)	370, 709, 1034
BmiI	GGNNCC	4 cut(s)	12, 711, 901, 960
BmrFI	CCNGG	1 cut(s)	714
BpmI	CTGGAG	2 cut(s)	654, 989
Bpu14I	TTCGAA	1 cut(s)	984
BsaBI	GATNNNNATC	2 cut(s)	398, 478
BsaJI	CCNNGG	3 cut(s)	20, 366, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 880
Bse1I	ACTGG	2 cut(s)	811, 839
Bse8I	GATNNNNATC	2 cut(s)	398, 478
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	3 cut(s)	20, 366, 712
BseGI	GGATG	1 cut(s)	1048
BseJI	GATNNNNATC	2 cut(s)	398, 478
BseLI	CCNNNNNNNGG	2 cut(s)	529, 880
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	811, 839
BseRI	GAGGAG	2 cut(s)	105, 144
BseXI	GCAGC	2 cut(s)	424, 665
Bsh1236I	CGCG	2 cut(s)	89, 410
BshFI	GGCC	3 cut(s)	275, 522, 710
BsiHKAI	GWGCWC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	529, 880
BsmAI	GTCTC	2 cut(s)	101, 854
BsmI	GAATGC	1 cut(s)	981
BsnI	GGCC	3 cut(s)	275, 522, 710
Bsp119I	TTCGAA	1 cut(s)	984
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	27, 393, 588
BspACI	CCGC	4 cut(s)	87, 570, 651, 822
BspANI	GGCC	3 cut(s)	275, 522, 710
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	2 cut(s)	89, 410
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	4 cut(s)	12, 711, 901, 960
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	984
BsrI	ACTGG	2 cut(s)	811, 839
BssECI	CCNNGG	3 cut(s)	20, 366, 712
BssMI	GATC	3 cut(s)	27, 393, 588
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	3 cut(s)	152, 367, 436
Bst6I	CTCTTC	2 cut(s)	370, 981
BstBI	TTCGAA	1 cut(s)	984
BstC8I	GCNNGC	1 cut(s)	708
BstDEI	CTNAG	3 cut(s)	226, 306, 879
BstDSI	CCRYGG	1 cut(s)	366
BstENI	CCTNNNNNAGG	1 cut(s)	878
BstF5I	GGATG	1 cut(s)	1048
BstFNI	CGCG	2 cut(s)	89, 410
BstHHI	GCGC	2 cut(s)	91, 412
BstKTI	GATC	3 cut(s)	30, 396, 591
BstMAI	GTCTC	2 cut(s)	101, 854
BstMBI	GATC	3 cut(s)	27, 393, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	712
BstUI	CGCG	2 cut(s)	89, 410
BstV1I	GCAGC	2 cut(s)	424, 665
BsuRI	GGCC	3 cut(s)	275, 522, 710
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	1048
BtsIMutI	CAGTG	2 cut(s)	432, 804
Cac8I	GCNNGC	1 cut(s)	708
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	2 cut(s)	91, 412
Cfr13I	GGNCC	3 cut(s)	370, 709, 1034
Csp6I	GTAC	2 cut(s)	144, 747
CviAII	CATG	6 cut(s)	82, 281, 550, 586, 598, 727
CviQI	GTAC	2 cut(s)	144, 747
DdeI	CTNAG	3 cut(s)	226, 306, 879
DpnI	GATC	3 cut(s)	29, 395, 590
DpnII	GATC	3 cut(s)	27, 393, 588
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	370, 981
EarI	CTCTTC	2 cut(s)	370, 981
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	370, 1034
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	6 cut(s)	85, 284, 553, 589, 601, 730
FatI	CATG	6 cut(s)	81, 280, 549, 585, 597, 726
FbaI	TGATCA	2 cut(s)	27, 588
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	413, 651, 654, 822
FokI	GGATG	1 cut(s)	1055
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	4 cut(s)	413, 651, 654, 822
FspBI	CTAG	3 cut(s)	216, 764, 887
GlaI	GCGC	2 cut(s)	90, 411
GluI	GCNGC	4 cut(s)	413, 651, 654, 822
GsuI	CTGGAG	2 cut(s)	654, 989
HaeIII	GGCC	3 cut(s)	275, 522, 710
HhaI	GCGC	2 cut(s)	91, 412
Hin1II	CATG	6 cut(s)	85, 284, 553, 589, 601, 730
Hin6I	GCGC	2 cut(s)	89, 410
HinP1I	GCGC	2 cut(s)	89, 410
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	8 cut(s)	48, 123, 284, 381, 474, 606, 691, 717
HphI	GGTGA	2 cut(s)	37, 673
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	9 cut(s)	106, 128, 198, 307, 374, 605, 935, 1019, 1038
Hpy188III	TCNNGA	4 cut(s)	586, 962, 994, 1006
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	7 cut(s)	265, 305, 567, 573, 913, 1003, 1033
HpyCH4III	ACNGT	3 cut(s)	152, 367, 436
HpyCH4V	TGCA	4 cut(s)	280, 389, 842, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	3 cut(s)	226, 306, 879
Hsp92II	CATG	6 cut(s)	85, 284, 553, 589, 601, 730
HspAI	GCGC	2 cut(s)	89, 410
Ksp22I	TGATCA	2 cut(s)	27, 588
Kzo9I	GATC	3 cut(s)	27, 393, 588
LmnI	GCTCC	4 cut(s)	16, 131, 314, 1008
Lsp1109I	GCAGC	2 cut(s)	424, 665
MaeI	CTAG	3 cut(s)	216, 764, 887
MalI	GATC	3 cut(s)	29, 395, 590
MboI	GATC	3 cut(s)	27, 393, 588
MboII	GAAGA	6 cut(s)	51, 260, 387, 634, 742, 998
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	6 cut(s)	416, 438, 464, 770, 980, 998
MlyI	GAGTC	2 cut(s)	375, 726
MmeI	TCCRAC	5 cut(s)	49, 689, 855, 898, 1042
MroXI	GAANNNNTTC	2 cut(s)	76, 1013
MseI	TTAA	1 cut(s)	869
MslI	CAYNNNNRTG	2 cut(s)	548, 596
MspA1I	CMGCKG	1 cut(s)	896
MspR9I	CCNGG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	981
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	2 cut(s)	89, 410
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	3 cut(s)	27, 393, 588
NlaIII	CATG	6 cut(s)	85, 284, 553, 589, 601, 730
NlaIV	GGNNCC	4 cut(s)	12, 711, 901, 960
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	984
PagI	TCATGA	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 990
PctI	GAATGC	1 cut(s)	981
PdmI	GAANNNNTTC	2 cut(s)	76, 1013
PfeI	GAWTC	6 cut(s)	48, 123, 284, 474, 606, 691
PkrI	GCNGC	4 cut(s)	414, 652, 655, 823
PleI	GAGTC	2 cut(s)	375, 725
PpsI	GAGTC	2 cut(s)	375, 725
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	4 cut(s)	12, 711, 901, 960
PspPI	GGNCC	3 cut(s)	370, 709, 1034
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	2 cut(s)	145, 748
RsaNI	GTAC	2 cut(s)	144, 747
RseI	CAYNNNNRTG	2 cut(s)	548, 596
SacI	GAGCTC	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	869
SatI	GCNGC	4 cut(s)	413, 651, 654, 822
Sau3AI	GATC	3 cut(s)	27, 393, 588
Sau96I	GGNCC	3 cut(s)	370, 709, 1034
SchI	GAGTC	2 cut(s)	375, 726
ScrFI	CCNGG	1 cut(s)	714
SduI	GDGCHC	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	984
SinI	GGWCC	2 cut(s)	370, 1034
SmiMI	CAYNNNNRTG	2 cut(s)	548, 596
Sse9I	AATT	6 cut(s)	416, 438, 464, 770, 980, 998
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	4 cut(s)	87, 570, 651, 822
SspMI	CTAG	3 cut(s)	216, 764, 887
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	152, 367, 436
TaqI	TCGA	4 cut(s)	255, 291, 984, 993
TasI	AATT	6 cut(s)	416, 438, 464, 770, 980, 998
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	2 cut(s)	653, 824
TfiI	GAWTC	6 cut(s)	48, 123, 284, 474, 606, 691
Tru1I	TTAA	1 cut(s)	869
Tru9I	TTAA	1 cut(s)	869
TscAI	CASTG	2 cut(s)	439, 811
TseI	GCWGC	2 cut(s)	412, 653
TspDTI	ATGAA	5 cut(s)	225, 279, 297, 743, 934
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	439, 811
VpaK11BI	GGWCC	2 cut(s)	370, 1034
XagI	CCTNNNNNAGG	1 cut(s)	878
XceI	RCATGY	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	2 cut(s)	76, 1013
XspI	CTAG	3 cut(s)	216, 764, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.