Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001417.1

Orthogroup ID

OG0025510

Physical Location & Seq

Genomic Coordinates Forward (+)

64749 .. 66451

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgcggcatcgtctcagtaaatcgaactgcagttcttcacgtagcgcaacggatcgtcgtccacgcgcctctcttctctcctcgccgcgtctgcttcccgatccaagccaaggccttgacgagctcattcaaatcgcctctcccctctctccgcctctccgcctctccgccgctctttcccgccgatcctggtccctctcctcctccgatttcaagctcaggccttggacttctcctgccttcgatcggagcagtttcgaggtcgctgctactgccgagagctccgacgagaccgtcgagcctaagagcaacttgttcaagactctcgagctcgggtcgttgttcggcctctggtacctgttcaacatctacatcaatatctataacaaacagcttttattgttagtgatagtagcttttgtgacctcgcctgaggttgccggaaatctcatcacagtagcttttggtgttagtgacagtagcttttgtgatcgccggaggtcggccggagactcgccggaagttggtcggaggtcggccggaaacctgccggagttgacaggagaggagagagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

192

Amino Acids

21.17

Weight (kDa)

8.68

Isoelectric Point (pI)

80.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025510)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001417.1_g000016
rosa_samantha	Rh1CG231600 Rh4AG184300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	555
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	2 cut(s)	66, 88
AciI	CCGC	7 cut(s)	4, 86, 152, 160, 168, 171, 181
AclWI	GGATC	3 cut(s)	60, 95, 180
AcoI	YGGCCR	2 cut(s)	504, 537
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	4 cut(s)	110, 246, 502, 524
AgsI	TTSAA	4 cut(s)	131, 214, 319, 364
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	8 cut(s)	124, 217, 282, 331, 394, 416, 461, 483
AluI	AGCT	8 cut(s)	124, 217, 282, 331, 394, 416, 461, 483
Alw21I	GWGCWC	3 cut(s)	126, 284, 333
Alw26I	GTCTC	3 cut(s)	17, 284, 504
AlwI	GGATC	3 cut(s)	60, 95, 180
Ama87I	CYCGRG	2 cut(s)	326, 332
AoxI	GGCC	5 cut(s)	112, 221, 346, 504, 537
ApeKI	GCWGC	1 cut(s)	266
Asp718I	GGTACC	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	47, 68
AspS9I	GGNCC	1 cut(s)	192
AvaI	CYCGRG	2 cut(s)	326, 332
AvaII	GGWCC	1 cut(s)	192
AxyI	CCTNAGG	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	3 cut(s)	126, 284, 333
Bbv12I	GWGCWC	3 cut(s)	126, 284, 333
BbvI	GCAGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	17, 284, 504
BfmI	CTRYAG	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	555
BisI	GCNGC	4 cut(s)	5, 86, 171, 267
BlsI	GCNGC	4 cut(s)	6, 87, 172, 268
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	2 cut(s)	326, 332
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	194, 356
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	109, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 246, 502, 524
Bse21I	CCTNAGG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	109, 224
BseLI	CCNNNNNNNGG	4 cut(s)	110, 246, 502, 524
BseMII	CTCAG	3 cut(s)	28, 232, 423
BseRI	GAGGAG	3 cut(s)	70, 190, 193
BseX3I	CGGCCG	2 cut(s)	504, 537
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	66, 88
Bsh1285I	CGRYCG	3 cut(s)	247, 507, 540
BshFI	GGCC	5 cut(s)	114, 223, 348, 506, 539
BshNI	GGYRCC	1 cut(s)	354
BsiEI	CGRYCG	3 cut(s)	247, 507, 540
BsiHKAI	GWGCWC	3 cut(s)	126, 284, 333
BsiHKCI	CYCGRG	2 cut(s)	326, 332
BsiSI	CCGG	6 cut(s)	441, 496, 507, 518, 540, 551
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	4 cut(s)	110, 246, 502, 524
BsmAI	GTCTC	3 cut(s)	17, 284, 504
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	5 cut(s)	114, 223, 348, 506, 539
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	2 cut(s)	326, 332
Bsp1286I	GDGCHC	3 cut(s)	126, 284, 333
Bsp143I	GATC	5 cut(s)	52, 100, 185, 244, 490
BspACI	CCGC	7 cut(s)	4, 86, 152, 160, 168, 171, 181
BspANI	GGCC	5 cut(s)	114, 223, 348, 506, 539
BspCNI	CTCAG	3 cut(s)	27, 231, 424
BspFNI	CGCG	2 cut(s)	66, 88
BspLI	GGNNCC	2 cut(s)	194, 356
BspMAI	CTGCAG	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	555
BspPI	GGATC	3 cut(s)	60, 95, 180
BspT107I	GGYRCC	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	109, 224
BssMI	GATC	5 cut(s)	52, 100, 185, 244, 490
BssT1I	CCWWGG	2 cut(s)	109, 224
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	295, 457, 479
Bst6I	CTCTTC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	41
BstDEI	CTNAG	4 cut(s)	14, 218, 303, 432
BstFNI	CGCG	2 cut(s)	66, 88
BstHHI	GCGC	2 cut(s)	47, 68
BstKTI	GATC	5 cut(s)	55, 103, 188, 247, 493
BstMAI	GTCTC	3 cut(s)	17, 284, 504
BstMBI	GATC	5 cut(s)	52, 100, 185, 244, 490
BstMCI	CGRYCG	3 cut(s)	247, 507, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 272
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	2 cut(s)	66, 88
BstV1I	GCAGC	1 cut(s)	253
BstZI	CGGCCG	2 cut(s)	504, 537
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	5 cut(s)	114, 223, 348, 506, 539
BveI	ACCTGC	1 cut(s)	555
CfoI	GCGC	2 cut(s)	47, 68
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	355
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	4 cut(s)	14, 218, 303, 432
DpnI	GATC	5 cut(s)	54, 102, 187, 246, 492
DpnII	GATC	5 cut(s)	52, 100, 185, 244, 490
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	2 cut(s)	504, 537
EagI	CGGCCG	2 cut(s)	504, 537
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	3 cut(s)	141, 149, 157
Ecl136II	GAGCTC	3 cut(s)	124, 282, 331
EclXI	CGGCCG	2 cut(s)	504, 537
Eco130I	CCWWGG	2 cut(s)	109, 224
Eco147I	AGGCCT	2 cut(s)	114, 223
Eco24I	GRGCYC	3 cut(s)	126, 284, 333
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	192
Eco52I	CGGCCG	2 cut(s)	504, 537
Eco53kI	GAGCTC	3 cut(s)	124, 282, 331
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	326, 332
EcoICRI	GAGCTC	3 cut(s)	124, 282, 331
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	2 cut(s)	109, 224
EcoT38I	GRGCYC	3 cut(s)	126, 284, 333
ErhI	CCWWGG	2 cut(s)	109, 224
Esp3I	CGTCTC	1 cut(s)	17
FaiI	YATR	1 cut(s)	384
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	178
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	4 cut(s)	5, 86, 171, 267
FriOI	GRGCYC	3 cut(s)	126, 284, 333
Fsp4HI	GCNGC	4 cut(s)	5, 86, 171, 267
GlaI	GCGC	2 cut(s)	46, 67
GluI	GCNGC	4 cut(s)	5, 86, 171, 267
HaeIII	GGCC	5 cut(s)	114, 223, 348, 506, 539
HapII	CCGG	6 cut(s)	441, 496, 507, 518, 540, 551
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	2 cut(s)	47, 68
Hin6I	GCGC	2 cut(s)	45, 66
HinP1I	GCGC	2 cut(s)	45, 66
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HinfI	GANTC	2 cut(s)	322, 512
HpaII	CCGG	6 cut(s)	441, 496, 507, 518, 540, 551
Hpy166II	GTNNAC	2 cut(s)	62, 558
Hpy188I	TCNGA	4 cut(s)	208, 249, 286, 531
Hpy188III	TCNNGA	3 cut(s)	98, 319, 326
Hpy8I	GTNNAC	2 cut(s)	62, 558
Hpy99I	CGWCG	3 cut(s)	60, 290, 299
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	295, 457, 479
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 272
HpyF3I	CTNAG	4 cut(s)	14, 218, 303, 432
HpySE526I	ACGT	1 cut(s)	40
HspAI	GCGC	2 cut(s)	45, 66
KpnI	GGTACC	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	52, 100, 185, 244, 490
LmnI	GCTCC	2 cut(s)	249, 287
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	2 cut(s)	421, 473
MalI	GATC	5 cut(s)	54, 102, 187, 246, 492
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	5 cut(s)	52, 100, 185, 244, 490
MboII	GAAGA	2 cut(s)	27, 65
MhlI	GDGCHC	3 cut(s)	126, 284, 333
MlyI	GAGTC	2 cut(s)	316, 506
MmeI	TCCRAC	2 cut(s)	309, 509
MspI	CCGG	6 cut(s)	441, 496, 507, 518, 540, 551
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	2 cut(s)	66, 88
MwoI	GCNNNNNNNGC	2 cut(s)	91, 272
NdeII	GATC	5 cut(s)	52, 100, 185, 244, 490
NlaIV	GGNNCC	2 cut(s)	194, 356
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	421, 473
PaeR7I	CTCGAG	1 cut(s)	326
PceI	AGGCCT	2 cut(s)	114, 223
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	6, 87, 172, 268
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	2 cut(s)	316, 506
PpsI	GAGTC	2 cut(s)	316, 506
Ppu21I	YACGTR	1 cut(s)	41
Psp124BI	GAGCTC	3 cut(s)	126, 284, 333
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	194, 356
PspPI	GGNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	32
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacI	GAGCTC	3 cut(s)	126, 284, 333
SatI	GCNGC	4 cut(s)	5, 86, 171, 267
Sau3AI	GATC	5 cut(s)	52, 100, 185, 244, 490
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	2 cut(s)	316, 506
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	3 cut(s)	126, 284, 333
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	28
Sfr274I	CTCGAG	1 cut(s)	326
SinI	GGWCC	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SseBI	AGGCCT	2 cut(s)	114, 223
SsiI	CCGC	7 cut(s)	4, 86, 152, 160, 168, 171, 181
SstI	GAGCTC	3 cut(s)	126, 284, 333
StuI	AGGCCT	2 cut(s)	114, 223
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	109, 224
TaaI	ACNGT	3 cut(s)	295, 457, 479
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	5 cut(s)	23, 243, 258, 297, 327
TauI	GCSGC	3 cut(s)	7, 88, 173
TseFI	GTSAC	2 cut(s)	421, 473
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	2 cut(s)	421, 473
TspGWI	ACGGA	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.