Rh1CG231600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0025510
Physical Location & Seq
Reverse (-)
48765061 .. 48771233
6173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG231600.1

Sequence Viewer

Length: 414 bp
ATGGGGCTTCGCCTTCTTCATTGTCGTCATCGACGGTGGAGGATGCTCCGTGCAACCCTCAGACCACCGCCTTCACTCTCTCGTCGTCTCTTCCTCTCCTCAAGTCTCGTCGCCTCTCTGCCCAAACCTCCACCTCAGATTCACACCCACACACGTGTCTCCGCCTCGCTCAAGCCTGACACCGCTCTCACCTCCTCACCAATGACGCCCTCTCCACCGCTCTTTCCCACCGATCCTGGTCCCTCTCCTCCTTCGATTTTAAGCTCAGGCCCTGGACTTCTCCTACAGTCGATCAGAGCAGTTTCAGGTCGCCACTACTGCCGAGAGCTCCGGCGAGACCTCCAAGCAGAAGAGCAGCTTGTTCAAGACTCTCGAGCTCGGGTCGTTGTTATGCCTCTGTTGTACCATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.29

Weight (kDa)

11.63

Isoelectric Point (pI)

91.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025510)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001417.1_g000016
rosa_samantha Rh1CG231600 Rh4AG184300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 185, 220
AciI CCGC 4 cut(s) 68, 162, 183, 218
AclWI GGATC 1 cut(s) 227
AcvI CACGTG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 1 cut(s) 404
AflIII ACRYGT 2 cut(s) 152, 154
AgsI TTSAA 1 cut(s) 365
AjnI CCWGG 2 cut(s) 235, 271
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 4 cut(s) 264, 328, 358, 377
AluI AGCT 4 cut(s) 264, 328, 358, 377
Alw21I GWGCWC 2 cut(s) 330, 379
Alw26I GTCTC 4 cut(s) 92, 110, 163, 330
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 2 cut(s) 372, 378
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 239, 269
AsuHPI GGTGA 2 cut(s) 181, 189
AvaI CYCGRG 2 cut(s) 372, 378
AvaII GGWCC 1 cut(s) 239
BanII GRGCYC 2 cut(s) 330, 379
BbrPI CACGTG 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 330, 379
BbvI GCAGC 1 cut(s) 367
BciT130I CCWGG 2 cut(s) 237, 273
BcoDI GTCTC 4 cut(s) 92, 110, 163, 330
BfmI CTRYAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 2 cut(s) 237, 273
Bme18I GGWCC 1 cut(s) 239
BmeT110I CYCGRG 2 cut(s) 372, 378
BmgT120I GGNCC 2 cut(s) 239, 269
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 237, 273
BmsI GCATC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 265
BpuEI CTTGAG 2 cut(s) 85, 155
BsaAI YACGTR 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
BseBI CCWGG 2 cut(s) 237, 273
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 73, 149, 279
BseRI GAGGAG 3 cut(s) 88, 184, 237
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 1 cut(s) 270
BsiHKAI GWGCWC 2 cut(s) 330, 379
BsiHKCI CYCGRG 2 cut(s) 372, 378
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 225
BsmAI GTCTC 4 cut(s) 92, 110, 163, 330
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 2 cut(s) 372, 378
Bsp1286I GDGCHC 2 cut(s) 330, 379
Bsp143I GATC 2 cut(s) 232, 291
BspACI CCGC 4 cut(s) 68, 162, 183, 218
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 3 cut(s) 72, 148, 278
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 330
BsrBI CCGCTC 2 cut(s) 185, 220
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 2 cut(s) 232, 291
BssNI GRCGYC 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 237, 273
Bst4CI ACNGT 2 cut(s) 36, 288
Bst6I CTCTTC 2 cut(s) 95, 345
BstACI GRCGYC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 59, 135, 265
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 2 cut(s) 235, 294
BstMAI GTCTC 4 cut(s) 92, 110, 163, 330
BstMBI GATC 2 cut(s) 232, 291
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 2 cut(s) 237, 273
BstSCI CCNGG 2 cut(s) 235, 271
BstSFI CTRYAG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 239, 269
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 403
CviJI RGCY 7 cut(s) 7, 175, 264, 270, 328, 358, 377
CviKI_1 RGCY 7 cut(s) 7, 175, 264, 270, 328, 358, 377
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 3 cut(s) 59, 135, 265
DpnI GATC 2 cut(s) 234, 293
DpnII GATC 2 cut(s) 232, 291
Eam1104I CTCTTC 2 cut(s) 95, 345
EarI CTCTTC 2 cut(s) 95, 345
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 2 cut(s) 328, 377
Eco24I GRGCYC 2 cut(s) 330, 379
Eco31I GGTCTC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 2 cut(s) 328, 377
Eco72I CACGTG 1 cut(s) 155
Eco88I CYCGRG 2 cut(s) 372, 378
EcoICRI GAGCTC 2 cut(s) 328, 377
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 235, 271
EcoT38I GRGCYC 2 cut(s) 330, 379
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 1 cut(s) 392
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 2 cut(s) 330, 379
Fsp4HI GCNGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 206
HinfI GANTC 2 cut(s) 139, 368
HpaII CCGG 1 cut(s) 331
HphI GGTGA 2 cut(s) 181, 189
Hpy188I TCNGA 3 cut(s) 62, 138, 296
Hpy188III TCNNGA 2 cut(s) 365, 372
Hpy99I CGWCG 3 cut(s) 36, 87, 113
HpyAV CCTTC 3 cut(s) 23, 81, 261
HpyCH4III ACNGT 2 cut(s) 36, 288
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 3 cut(s) 59, 135, 265
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 232, 291
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 51, 333
LpnPI CCDG 8 cut(s) 189, 222, 249, 252, 258, 285, 291, 344
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 33
MaeII ACGT 1 cut(s) 154
MalI GATC 2 cut(s) 234, 293
MbiI CCGCTC 2 cut(s) 185, 220
MboI GATC 2 cut(s) 232, 291
MboII GAAGA 3 cut(s) 8, 82, 362
MhlI GDGCHC 2 cut(s) 330, 379
MlyI GAGTC 1 cut(s) 362
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 2 cut(s) 237, 273
MvaI CCWGG 2 cut(s) 237, 273
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 2 cut(s) 232, 291
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 347
OliI CACNNNNGTG 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 1 cut(s) 362
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
PpsI GAGTC 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 155
Psp124BI GAGCTC 2 cut(s) 330, 379
Psp6I CCWGG 2 cut(s) 235, 271
PspCI CACGTG 1 cut(s) 155
PspGI CCWGG 2 cut(s) 235, 271
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 2 cut(s) 239, 269
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 2 cut(s) 330, 379
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 2 cut(s) 232, 291
Sau96I GGNCC 2 cut(s) 239, 269
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 2 cut(s) 237, 273
SduI GDGCHC 2 cut(s) 330, 379
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 1 cut(s) 284
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 3 cut(s) 100, 170, 372
SmoI CTYRAG 3 cut(s) 100, 170, 372
SsiI CCGC 4 cut(s) 68, 162, 183, 218
SstI GAGCTC 2 cut(s) 330, 379
StyD4I CCNGG 2 cut(s) 235, 271
TaaI ACNGT 2 cut(s) 36, 288
TaiI ACGT 1 cut(s) 157
TaqI TCGA 4 cut(s) 31, 254, 290, 373
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.