Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0025510

Physical Location & Seq

Genomic Coordinates Reverse (-)

45791470 .. 45796204

Gene Structure 4735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG184300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTCCTGGCAACCCGTAGACCGCCGCCTTCTCTCTCTCACCGTCTCTTCCTCTCCTCAAGACTTGCCACCTCTCCGTCCAAACCTCCACCTCAGATTCACGCCCACACATGTGTCTCCGCCTCGCTCAAGCCTGACACTGCTCTCACCAATGACGCCCTCTCCGCCGCTCTTTCCCTTCGATCCTGGTCCCTCTCCTCCTCCAATTTCAAGCTCAGGCCCTGGACTTCTCCTGCCGTCGATCGGAGCAGTTTCGAGGTTGCCGCTACTGCCGAGAGCTTCAGCGAGACCCCCGAGCCGAAGAGCAGCTTGTTTAAGACTCTCGAGCTCAGGTCGTTGTTCGGCCTCTGGTACCTGTTCAACATCTACATCAATATCTATAACAACCAGACCTATCGAACTCGGACCAGCAAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009670 GO:0009941 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0016020 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034219 GO:0034220 GO:0035436 GO:0042170 GO:0042873 GO:0042879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

139

Amino Acids

15.52

Weight (kDa)

10.16

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025510)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001417.1_g000016
rosa_samantha	Rh1CG231600 Rh4AG184300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	6 cut(s)	23, 26, 120, 165, 168, 264
AclWI	GGATC	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	211, 361
AjnI	CCWGG	3 cut(s)	6, 185, 221
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	4 cut(s)	214, 279, 309, 328
AluI	AGCT	4 cut(s)	214, 279, 309, 328
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	3 cut(s)	50, 121, 281
AlwI	GGATC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	222
Ama87I	CYCGRG	2 cut(s)	293, 323
AoxI	GGCC	2 cut(s)	218, 343
ApeKI	GCWGC	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	189, 219, 405
AsuHPI	GGTGA	2 cut(s)	32, 139
AvaI	CYCGRG	2 cut(s)	293, 323
AvaII	GGWCC	2 cut(s)	189, 405
BanI	GGYRCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	318
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	3 cut(s)	8, 187, 223
BcoDI	GTCTC	3 cut(s)	50, 121, 281
BisI	GCNGC	4 cut(s)	26, 168, 264, 307
BlsI	GCNGC	4 cut(s)	27, 169, 265, 308
Bme1390I	CCNGG	3 cut(s)	8, 187, 223
Bme18I	GGWCC	2 cut(s)	189, 405
BmeT110I	CYCGRG	2 cut(s)	293, 323
BmgT120I	GGNCC	3 cut(s)	189, 219, 405
BmiI	GGNNCC	2 cut(s)	191, 353
BmrFI	CCNGG	3 cut(s)	8, 187, 223
Bpu10I	CCTNAGC	2 cut(s)	215, 329
BpuEI	CTTGAG	2 cut(s)	43, 113
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
BseBI	CCWGG	3 cut(s)	8, 187, 223
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	107, 229, 343
BseRI	GAGGAG	3 cut(s)	46, 187, 190
BseXI	GCAGC	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	220, 345
BshNI	GGYRCC	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	2 cut(s)	293, 323
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	3 cut(s)	50, 121, 281
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	220, 345
Bso31I	GGTCTC	1 cut(s)	281
BsoBI	CYCGRG	2 cut(s)	293, 323
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	182, 241
BspACI	CCGC	6 cut(s)	23, 26, 120, 165, 168, 264
BspANI	GGCC	2 cut(s)	220, 345
BspCNI	CTCAG	3 cut(s)	106, 228, 342
BspLI	GGNNCC	2 cut(s)	191, 353
BspPI	GGATC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	182, 241
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	8, 187, 223
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	53, 296
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	93, 215, 329
BstKTI	GATC	2 cut(s)	185, 244
BstMAI	GTCTC	3 cut(s)	50, 121, 281
BstMBI	GATC	2 cut(s)	182, 241
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 269
BstNI	CCWGG	3 cut(s)	8, 187, 223
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	3 cut(s)	6, 185, 221
BstV1I	GCAGC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	220, 345
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	189, 219, 405
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	111
CviJI	RGCY	8 cut(s)	133, 214, 220, 279, 298, 309, 328, 345
CviKI_1	RGCY	8 cut(s)	133, 214, 220, 279, 298, 309, 328, 345
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	93, 215, 329
DpnI	GATC	2 cut(s)	184, 243
DpnII	GATC	2 cut(s)	182, 241
Eam1104I	CTCTTC	2 cut(s)	53, 296
EarI	CTCTTC	2 cut(s)	53, 296
EciI	GGCGGA	2 cut(s)	109, 154
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	189, 405
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	293, 323
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	3 cut(s)	6, 185, 221
EcoT38I	GRGCYC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	114
FaiI	YATR	2 cut(s)	112, 381
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	26, 168, 264, 307
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	4 cut(s)	26, 168, 264, 307
GluI	GCNGC	4 cut(s)	26, 168, 264, 307
HaeIII	GGCC	2 cut(s)	220, 345
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	114
HinfI	GANTC	2 cut(s)	97, 319
HphI	GGTGA	2 cut(s)	32, 139
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	3 cut(s)	96, 246, 405
Hpy188III	TCNNGA	2 cut(s)	60, 323
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	39, 188
HpyCH4III	ACNGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 269
HpyF3I	CTNAG	3 cut(s)	93, 215, 329
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	114
KpnI	GGTACC	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	182, 241
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	2 cut(s)	9, 246
Lsp1109I	GCAGC	1 cut(s)	318
MalI	GATC	2 cut(s)	184, 243
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	2 cut(s)	182, 241
MboII	GAAGA	2 cut(s)	40, 313
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	313
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	8, 187, 223
MvaI	CCWGG	3 cut(s)	8, 187, 223
MwoI	GCNNNNNNNGC	2 cut(s)	164, 269
NdeII	GATC	2 cut(s)	182, 241
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	2 cut(s)	191, 353
NmeAIII	GCCGAG	1 cut(s)	298
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	323
PciI	ACATGT	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	27, 169, 265, 308
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PscI	ACATGT	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	3 cut(s)	6, 185, 221
PspGI	CCWGG	3 cut(s)	6, 185, 221
PspN4I	GGNNCC	2 cut(s)	191, 353
PspPI	GGNCC	3 cut(s)	189, 219, 405
PstNI	CAGNNNCTG	1 cut(s)	222
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	26, 168, 264, 307
Sau3AI	GATC	2 cut(s)	182, 241
Sau96I	GGNCC	3 cut(s)	189, 219, 405
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	3 cut(s)	8, 187, 223
SduI	GDGCHC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	2 cut(s)	189, 405
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	3 cut(s)	58, 128, 323
SmoI	CTYRAG	3 cut(s)	58, 128, 323
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	6 cut(s)	23, 26, 120, 165, 168, 264
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	6, 185, 221
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	5 cut(s)	181, 240, 255, 324, 397
TasI	AATT	1 cut(s)	205
TauI	GCSGC	3 cut(s)	28, 170, 266
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	189, 405
XceI	RCATGY	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.