Rmu_sc0001426.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001426.1
OG0023066
Physical Location & Seq
Forward (+)
10459 .. 13111
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001426.1_g000006.1.cds

Sequence Viewer

Length: 1107 bp
atgagtaacctgaacaaattggactttgctccattgggaacaactggctctaaatatcacaggtgggttcgtgatatccgccagcatctcaaggccgatggaatcttggatatgattctcgagcctaaccaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagctatcatcctaaggactcgtcatatggatgattcactccagtacgagtgtatgaatgaagaagaccctagaaggctgtgggtctcactcgaagatagatttggcaacgtctccttttctacctccacctcacaccttgaagaacttgatcctaggagtccaaaaccggcggccccatcccaagaacctgccggaaacctaccgaaccggccaccggaagctccatatgactcgcagcaaatattccacctgttcaccatcttccggacctccaatttccaccaaattttgaaaagaagagaaaaagaaaagaagaagcccagcccaaaggtcaaagtgcagcccactgccacgtcagcaccggaccccattgccacgtcagcatccggtcaacaccagtcagccctccggtcaaccattttcgggcgactttccggcaacttttccagcctttttctggcaacttttccggccttttcccgtcgacttttcctgccattttctgaccactttttagggtcaaattttccggcgacctatttcgagcgactacgctcggaaattcctaatttcttggaagcgactacgctcagaaattttatttgttttcgtggtggccttttccgctccgaaactaaccctaatttcttgttctttttcaagatgagtaacctgaacaaattggactttgctccattgggaacaactggctctgaatatcacaggtgggttcgtgatatccgccagcatctcaaggccgatggaatcttggatatgattctcgagcctaaccaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcccagtacaagtgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

368

Amino Acids

41.68

Weight (kDa)

8.98

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023066)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001426.1_g000006 Rmu_sc0002030.1_g000017 Rmu_sc0016064.1_g000001 Rmu_sc0016496.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 831
AccI GTMKAC 1 cut(s) 688
AccIII TCCGGA 1 cut(s) 468
AciI CCGC 4 cut(s) 79, 374, 829, 946
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 413
AcsI RAATTY 4 cut(s) 489, 727, 765, 799
AfaI GTAC 2 cut(s) 248, 1096
AfiI CCNNNNNNNGG 4 cut(s) 418, 468, 627, 661
AgsI TTSAA 3 cut(s) 344, 496, 865
AjiI CACGTC 4 cut(s) 136, 558, 582, 1003
AjnI CCWGG 2 cut(s) 129, 996
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 6 cut(s) 155, 161, 206, 425, 1022, 1028
AluI AGCT 6 cut(s) 155, 161, 206, 425, 1022, 1028
Alw26I GTCTC 2 cut(s) 292, 319
AlwI GGATC 1 cut(s) 347
Ama87I CYCGRG 2 cut(s) 119, 986
Aor13HI TCCGGA 1 cut(s) 468
AoxI GGCC 6 cut(s) 93, 375, 413, 675, 820, 960
ApeKI GCWGC 4 cut(s) 179, 439, 544, 1046
ApoI RAATTY 4 cut(s) 489, 727, 765, 799
AspA2I CCTAGG 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 376, 471, 568
AsuHPI GGTGA 1 cut(s) 451
AvaI CYCGRG 2 cut(s) 119, 986
AvaII GGWCC 2 cut(s) 471, 568
AvrII CCTAGG 1 cut(s) 356
AxyI CCTNAGG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 4 cut(s) 191, 451, 556, 1058
BccI CCATC 5 cut(s) 92, 388, 470, 959, 1082
BciT130I CCWGG 2 cut(s) 131, 998
BcoDI GTCTC 2 cut(s) 292, 319
BfaI CTAG 2 cut(s) 273, 357
BfuAI ACCTGC 1 cut(s) 400
BglI GCCNNNNNGGC 2 cut(s) 188, 1055
BisI GCNGC 5 cut(s) 180, 375, 440, 545, 1047
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 5 cut(s) 181, 376, 441, 546, 1048
Bme1390I CCNGG 2 cut(s) 131, 998
Bme18I GGWCC 2 cut(s) 471, 568
BmeT110I CYCGRG 2 cut(s) 119, 986
BmgBI CACGTC 4 cut(s) 136, 558, 582, 1003
BmgT120I GGNCC 3 cut(s) 376, 471, 568
BmiI GGNNCC 2 cut(s) 378, 570
BmrFI CCNGG 2 cut(s) 131, 998
BmrI ACTGGG 1 cut(s) 1086
BmsI GCATC 3 cut(s) 94, 596, 961
BmuI ACTGGG 1 cut(s) 1086
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 4 cut(s) 74, 141, 941, 1008
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 356
BsaWI WCCGGW 5 cut(s) 418, 468, 565, 590, 612
Bsc4I CCNNNNNNNGG 4 cut(s) 418, 468, 627, 661
Bse118I RCCGGY 2 cut(s) 370, 411
Bse1I ACTGG 5 cut(s) 49, 244, 601, 916, 1092
Bse21I CCTNAGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 468
BseBI CCWGG 2 cut(s) 131, 998
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 5 cut(s) 210, 238, 380, 587, 1077
BseLI CCNNNNNNNGG 4 cut(s) 418, 468, 627, 661
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 1 cut(s) 808
BseNI ACTGG 5 cut(s) 49, 244, 601, 916, 1092
BseXI GCAGC 4 cut(s) 191, 451, 556, 1058
BseYI CCCAGC 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 6 cut(s) 95, 377, 415, 677, 822, 962
BsiHKCI CYCGRG 2 cut(s) 119, 986
BslI CCNNNNNNNGG 4 cut(s) 418, 468, 627, 661
BsmAI GTCTC 2 cut(s) 292, 319
BsmBI CGTCTC 1 cut(s) 319
BsnI GGCC 6 cut(s) 95, 377, 415, 677, 822, 962
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 2 cut(s) 119, 986
Bsp13I TCCGGA 1 cut(s) 468
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 4 cut(s) 79, 374, 829, 946
BspANI GGCC 6 cut(s) 95, 377, 415, 677, 822, 962
BspCNI CTCAG 1 cut(s) 807
BspEI TCCGGA 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 378, 570
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 831
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 2 cut(s) 370, 411
BsrI ACTGG 5 cut(s) 49, 244, 601, 916, 1092
BssAI RCCGGY 2 cut(s) 370, 411
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 131, 998
Bst4CI ACNGT 2 cut(s) 145, 1012
Bst6I CTCTTC 1 cut(s) 496
BstC8I GCNNGC 4 cut(s) 83, 153, 950, 1020
BstDEI CTNAG 4 cut(s) 184, 215, 794, 1051
BstF5I GGATG 5 cut(s) 210, 238, 380, 587, 1077
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 2 cut(s) 292, 319
BstMBI GATC 1 cut(s) 352
BstNI CCWGG 2 cut(s) 131, 998
BstSCI CCNGG 2 cut(s) 129, 996
BstV1I GCAGC 4 cut(s) 191, 451, 556, 1058
BstV2I GAAGAC 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 215
BsuRI GGCC 6 cut(s) 95, 377, 415, 677, 822, 962
BtrI CACGTC 4 cut(s) 136, 558, 582, 1003
BtsCI GGATG 5 cut(s) 210, 238, 380, 587, 1077
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 549
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 4 cut(s) 83, 153, 950, 1020
Cfr10I RCCGGY 2 cut(s) 370, 411
Cfr13I GGNCC 3 cut(s) 376, 471, 568
Csp6I GTAC 2 cut(s) 247, 1095
CviQI GTAC 2 cut(s) 247, 1095
DdeI CTNAG 4 cut(s) 184, 215, 794, 1051
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
EciI GGCGGA 2 cut(s) 68, 935
Eco130I CCWWGG 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 2 cut(s) 76, 943
Eco47I GGWCC 2 cut(s) 471, 568
Eco81I CCTNAGG 1 cut(s) 215
Eco88I CYCGRG 2 cut(s) 119, 986
EcoRII CCWGG 2 cut(s) 129, 996
EcoRV GATATC 2 cut(s) 76, 943
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 319
FaiI YATR 8 cut(s) 113, 228, 230, 257, 430, 432, 980, 1105
FauNDI CATATG 2 cut(s) 228, 430
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 5 cut(s) 180, 375, 440, 545, 1047
FokI GGATG 5 cut(s) 197, 245, 367, 574, 1064
Fsp4HI GCNGC 5 cut(s) 180, 375, 440, 545, 1047
FspBI CTAG 2 cut(s) 273, 357
GluI GCNGC 5 cut(s) 180, 375, 440, 545, 1047
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 6 cut(s) 95, 377, 415, 677, 822, 962
HincII GTYRAC 3 cut(s) 596, 618, 689
HindII GTYRAC 3 cut(s) 596, 618, 689
HindIII AAGCTT 2 cut(s) 159, 1026
HinfI GANTC 9 cut(s) 102, 115, 220, 236, 361, 434, 969, 982, 1087
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 4 cut(s) 459, 596, 618, 689
Hpy188I TCNGA 5 cut(s) 709, 763, 797, 835, 919
Hpy188III TCNNGA 6 cut(s) 71, 119, 469, 865, 938, 986
Hpy8I GTNNAC 4 cut(s) 459, 596, 618, 689
Hpy99I CGWCG 1 cut(s) 690
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 2 cut(s) 145, 1012
HpyCH4IV ACGT 5 cut(s) 135, 312, 557, 581, 1002
HpyCH4V TGCA 1 cut(s) 544
HpyF3I CTNAG 4 cut(s) 184, 215, 794, 1051
HpySE526I ACGT 5 cut(s) 135, 312, 557, 581, 1002
Kpn2I TCCGGA 1 cut(s) 468
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 4 cut(s) 34, 430, 836, 901
Lsp1109I GCAGC 4 cut(s) 191, 451, 556, 1058
LweI GCATC 3 cut(s) 94, 596, 961
MaeI CTAG 2 cut(s) 273, 357
MaeII ACGT 5 cut(s) 135, 312, 557, 581, 1002
MaeIII GTNAC 2 cut(s) 5, 872
MalI GATC 1 cut(s) 354
MbiI CCGCTC 1 cut(s) 831
MboI GATC 1 cut(s) 352
MboII GAAGA 7 cut(s) 275, 278, 308, 356, 457, 513, 529
MluCI AATT 9 cut(s) 17, 478, 489, 727, 765, 772, 799, 847, 884
MlyI GAGTC 4 cut(s) 214, 370, 428, 1081
MnlI CCTC 6 cut(s) 181, 337, 343, 484, 620, 1048
MroI TCCGGA 1 cut(s) 468
MslI CAYNNNNRTG 2 cut(s) 231, 1082
MspR9I CCNGG 2 cut(s) 131, 998
MvaI CCWGG 2 cut(s) 131, 998
NdeI CATATG 2 cut(s) 228, 430
NdeII GATC 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 378, 570
PaeR7I CTCGAG 2 cut(s) 119, 986
PfeI GAWTC 5 cut(s) 102, 115, 236, 969, 982
PkrI GCNGC 5 cut(s) 181, 376, 441, 546, 1048
PleI GAGTC 4 cut(s) 214, 369, 428, 1081
PpsI GAGTC 4 cut(s) 214, 369, 428, 1081
Psp6I CCWGG 2 cut(s) 129, 996
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 2 cut(s) 129, 996
PspN4I GGNNCC 2 cut(s) 378, 570
PspPI GGNCC 3 cut(s) 376, 471, 568
RsaI GTAC 2 cut(s) 248, 1096
RsaNI GTAC 2 cut(s) 247, 1095
RseI CAYNNNNRTG 2 cut(s) 231, 1082
SalI GTCGAC 1 cut(s) 687
SatI GCNGC 5 cut(s) 180, 375, 440, 545, 1047
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 3 cut(s) 376, 471, 568
SchI GAGTC 4 cut(s) 214, 370, 428, 1081
ScrFI CCNGG 2 cut(s) 131, 998
SfaNI GCATC 3 cut(s) 94, 596, 961
Sfr274I CTCGAG 2 cut(s) 119, 986
SinI GGWCC 2 cut(s) 471, 568
SlaI CTCGAG 2 cut(s) 119, 986
SmiMI CAYNNNNRTG 2 cut(s) 231, 1082
SmlI CTYRAG 6 cut(s) 89, 119, 156, 956, 986, 1023
SmoI CTYRAG 6 cut(s) 89, 119, 156, 956, 986, 1023
Sse9I AATT 9 cut(s) 17, 478, 489, 727, 765, 772, 799, 847, 884
SsiI CCGC 4 cut(s) 79, 374, 829, 946
SspI AATATT 1 cut(s) 447
SspMI CTAG 2 cut(s) 273, 357
StyD4I CCNGG 2 cut(s) 129, 996
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 145, 1012
TaiI ACGT 5 cut(s) 138, 315, 560, 584, 1005
TaqI TCGA 5 cut(s) 120, 294, 688, 747, 987
TasI AATT 9 cut(s) 17, 478, 489, 727, 765, 772, 799, 847, 884
TatI WGTACW 1 cut(s) 1094
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 5 cut(s) 102, 115, 236, 969, 982
TscAI CASTG 1 cut(s) 556
TseI GCWGC 4 cut(s) 179, 439, 544, 1046
TspDTI ATGAA 2 cut(s) 272, 276
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 471, 568
XapI RAATTY 4 cut(s) 489, 727, 765, 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XhoI CTCGAG 2 cut(s) 119, 986
XmaJI CCTAGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 688
XspI CTAG 2 cut(s) 273, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.