Rmu_sc0016064.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016064.1
OG0023066
Physical Location & Seq
Reverse (-)
88 .. 438
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016064.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atgagtaacctgaacaaattggattttgctccattgggaacaactggctctaaatatcacaggtgggttcgtgatatccgccagcatctcaaggccgatggaatcttggatacgattctcgagcctagccaggacgtgctaattgttgagcaagctcaagatttggaagcaaacagagcagccttagaggcaaatatagcgaaagccatcatccaaatgactcgtcatatggatgattcgctccagtacaagtgtatgaatgaagaagaccccagaaggctatgggtctcactcgaagatagatttggcaacgtccgtgactccctgcttcctgacctagaagtgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

116

Amino Acids

13.39

Weight (kDa)

5.12

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023066)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001426.1_g000006 Rmu_sc0002030.1_g000017 Rmu_sc0016064.1_g000001 Rmu_sc0016496.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AfaI GTAC 1 cut(s) 248
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 179
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
AvaI CYCGRG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 92, 215
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 126, 338
BfuI GTATCC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 74, 141
BsaI GGTCTC 1 cut(s) 292
Bse1I ACTGG 2 cut(s) 49, 244
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 210, 238
BseNI ACTGG 2 cut(s) 49, 244
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 119
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 292
BsrI ACTGG 2 cut(s) 49, 244
Bst2UI CCWGG 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 176, 188, 197
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 273
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 95
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 2 cut(s) 83, 153
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 8 cut(s) 48, 95, 124, 129, 155, 182, 206, 280
CviKI_1 RGCY 8 cut(s) 48, 95, 124, 129, 155, 182, 206, 280
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 76
FaiI YATR 5 cut(s) 197, 228, 230, 257, 283
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 197, 245
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 126, 338
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 95
HinfI GANTC 5 cut(s) 102, 115, 220, 236, 320
Hpy188III TCNNGA 4 cut(s) 71, 119, 158, 332
HpyAV CCTTC 1 cut(s) 270
HpyCH4IV ACGT 2 cut(s) 135, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 2 cut(s) 135, 312
LmnI GCTCC 2 cut(s) 34, 246
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 126, 338
MaeII ACGT 2 cut(s) 135, 312
MaeIII GTNAC 2 cut(s) 5, 317
MboII GAAGA 3 cut(s) 275, 278, 308
MluCI AATT 2 cut(s) 17, 141
MlyI GAGTC 2 cut(s) 214, 314
MnlI CCTC 1 cut(s) 181
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 176, 188, 197
NdeI CATATG 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 119
PfeI GAWTC 3 cut(s) 102, 115, 236
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 2 cut(s) 214, 314
PpsI GAGTC 2 cut(s) 214, 314
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SatI GCNGC 1 cut(s) 180
SchI GAGTC 2 cut(s) 214, 314
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 12, 65, 138, 157, 315, 339
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 2 cut(s) 17, 141
SsiI CCGC 1 cut(s) 79
SspMI CTAG 2 cut(s) 126, 338
StyD4I CCNGG 1 cut(s) 129
TaiI ACGT 2 cut(s) 138, 315
TaqI TCGA 2 cut(s) 120, 294
TasI AATT 2 cut(s) 17, 141
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 3 cut(s) 102, 115, 236
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 272, 276
TspGWI ACGGA 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 2 cut(s) 126, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.