Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001431.1

Orthogroup ID

OG0031132

Physical Location & Seq

Genomic Coordinates Reverse (-)

8834 .. 10937

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001431.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgtccaaagctcgcgtctacgccgacatcaatgtcctccgcctcaaggagtactgggactacgagtccttcaccatccaatgggggattaagagggagattaagattctgcaaaacctttgtggggggtccgaatgcgattgggggcttgagattgatgtcattgagttttgttttcttgacctttcttcaaattatgaacctcctgatttacttgtgaagtggcttggagctgatgaacagcctgtctatgttggatctgtgtacttagtggacaattgcccccatttgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

4.38

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031132)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001431.1_g000004
rosa_samantha	Rh2BG620400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	265
AfaI	GTAC	2 cut(s)	53, 266
AfiI	CCNNNNNNNGG	3 cut(s)	46, 81, 124
AgsI	TTSAA	1 cut(s)	192
AhdI	GACNNNNNGTC	1 cut(s)	64
AluBI	AGCT	2 cut(s)	11, 233
AluI	AGCT	2 cut(s)	11, 233
AlwI	GGATC	1 cut(s)	265
ArsI	GACNNNNNNTTYG	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	129
BccI	CCATC	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	129
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BpuEI	CTTGAG	2 cut(s)	29, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 81, 124
Bse1I	ACTGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	46, 81, 124
BseNI	ACTGG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	46, 81, 124
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstUI	CGCG	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	52, 265
CviJI	RGCY	5 cut(s)	11, 148, 226, 233, 244
CviKI_1	RGCY	5 cut(s)	11, 148, 226, 233, 244
CviQI	GTAC	2 cut(s)	52, 265
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	129
FaiI	YATR	2 cut(s)	198, 252
FaqI	GGGAC	1 cut(s)	71
FblI	GTMKAC	1 cut(s)	18
FokI	GGATG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	65, 106
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	3 cut(s)	19, 265, 274
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	179, 206
Hpy8I	GTNNAC	3 cut(s)	19, 265, 274
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	40, 219, 258
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	180
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	2 cut(s)	193, 277
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	47, 53, 87, 213
MseI	TTAA	2 cut(s)	90, 102
MunI	CAATTG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	15
NdeII	GATC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	81
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	53, 266
RsaNI	GTAC	2 cut(s)	52, 265
SaqAI	TTAA	2 cut(s)	90, 102
Sau3AI	GATC	1 cut(s)	257
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	1 cut(s)	74
SetI	ASST	5 cut(s)	13, 120, 186, 205, 235
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	44, 149
SmoI	CTYRAG	2 cut(s)	44, 149
Sse9I	AATT	2 cut(s)	193, 277
SsiI	CCGC	1 cut(s)	40
TasI	AATT	2 cut(s)	193, 277
TatI	WGTACW	2 cut(s)	51, 264
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	90, 102
Tru9I	TTAA	2 cut(s)	90, 102
TspDTI	ATGAA	2 cut(s)	213, 252
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.