Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0031132

Physical Location & Seq

Genomic Coordinates Reverse (-)

84318732 .. 84320711

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG620400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCCAAAGCTCGCGTCTACGCCGACATCAATGTCCTCCGCCTCAAGGAGTACTGGGACTACGAGTCCTTCACCATCCAATGGGGGATTAAGAGGGAGATTAAGATTCTGCAAAACCTTTGTGGGGGGTCCGAATGCGATTGGGGGCTTGAGATTGATGTCATTGAGTTTTGTTTTCTTGACCTTTCTTCAAATTATAAACCTCCTGATTTACTTGTGAAGTGGCTTGGAGCTGATGAACAGCCTTTTCTGAGTTCATTCTCGACGAGGTTGTGGAGCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

94

Amino Acids

11.03

Weight (kDa)

4.68

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031132)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001431.1_g000004
rosa_samantha	Rh2BG620400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	46, 81, 124
AgsI	TTSAA	1 cut(s)	192
AhdI	GACNNNNNGTC	1 cut(s)	64
AluBI	AGCT	2 cut(s)	11, 233
AluI	AGCT	2 cut(s)	11, 233
ArsI	GACNNNNNNTTYG	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	281
BccI	CCATC	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	129
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	130, 278
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BpuEI	CTTGAG	2 cut(s)	29, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 81, 124
Bse1I	ACTGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	46, 81, 124
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	46, 81, 124
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	130, 278
BsrI	ACTGG	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	6 cut(s)	11, 148, 226, 233, 244, 279
CviKI_1	RGCY	6 cut(s)	11, 148, 226, 233, 244, 279
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	251
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	281
FaiI	YATR	2 cut(s)	198, 283
FaqI	GGGAC	1 cut(s)	71
FblI	GTMKAC	1 cut(s)	18
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	281
HgaI	GACGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	65, 106
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	133, 252
Hpy188III	TCNNGA	3 cut(s)	179, 206, 262
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	230, 276
LpnPI	CCDG	2 cut(s)	40, 219
MboII	GAAGA	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	47, 53, 87, 213, 261
MseI	TTAA	2 cut(s)	90, 102
Mva1269I	GAATGC	1 cut(s)	140
MvnI	CGCG	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	130, 278
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	81
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	130, 278
PspPI	GGNCC	1 cut(s)	129
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	90, 102
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	6 cut(s)	13, 120, 186, 205, 235, 272
SinI	GGWCC	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	44, 149
SmoI	CTYRAG	2 cut(s)	44, 149
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	40
TaqI	TCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	193
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	90, 102
Tru9I	TTAA	2 cut(s)	90, 102
TspDTI	ATGAA	2 cut(s)	246, 252
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.