Rmu_sc0001474.1_g000008

tryptophan synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001474.1
Physical Location & Seq
Reverse (-)
46498 .. 46857
360 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
atgacaagctctaccaccactcccaaaaccataatcaccccgccactcccaaagccctactcctccttccagttgccctcaaaattctgcaaccgtgtcaccaccccttcttccacctcctgcaccctcatccgagactcgacgagtgtttgcatggcgggcttgccccgacccgattcatttggacggtttgggaagtatggcgggaagtacgtcccagaaacgctaatgcacgcgctgacagaactagagactgcgttttacgctctagctcatgacggagaatttgagaaagagttgaatgggattttgagagactatgttggtagggagactcctctctattttcagagaggctga

Protein Analysis

119

Amino Acids

13.22

Weight (kDa)

8.47

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024034)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15230
rosa_multiflora Rmu_sc0001474.1_g000008
rosa_rugosa Rorug06G0113400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 3 cut(s) 41, 158, 204
AcsI RAATTY 2 cut(s) 83, 284
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 2 cut(s) 9, 272
AluI AGCT 2 cut(s) 9, 272
Alw26I GTCTC 4 cut(s) 129, 245, 309, 326
ApoI RAATTY 2 cut(s) 83, 284
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 28, 91
BcoDI GTCTC 4 cut(s) 129, 245, 309, 326
BfaI CTAG 2 cut(s) 248, 269
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 2 cut(s) 52, 327
BsgI GTGCAG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 200
BsmAI GTCTC 4 cut(s) 129, 245, 309, 326
BsmFI GGGAC 1 cut(s) 200
BspACI CCGC 3 cut(s) 41, 158, 204
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 274
BsrI ACTGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 95, 189
BstC8I GCNNGC 3 cut(s) 160, 164, 234
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 238
BstMAI GTCTC 4 cut(s) 129, 245, 309, 326
BstMWI GCNNNNNNNGC 2 cut(s) 159, 263
BstUI CGCG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 160, 164, 234
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 154, 275
CviJI RGCY 5 cut(s) 9, 55, 162, 272, 357
CviKI_1 RGCY 5 cut(s) 9, 55, 162, 272, 357
CviQI GTAC 1 cut(s) 211
FaeI CATG 2 cut(s) 157, 278
FaiI YATR 5 cut(s) 32, 155, 201, 276, 321
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 153, 274
FauI CCCGC 3 cut(s) 48, 151, 197
FokI GGATG 1 cut(s) 116
FspBI CTAG 2 cut(s) 248, 269
GlaI GCGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 157, 278
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 3 cut(s) 137, 176, 334
HphI GGTGA 2 cut(s) 28, 91
Hpy188I TCNGA 2 cut(s) 134, 351
Hpy188III TCNNGA 1 cut(s) 275
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 76, 117
HpyCH4III ACNGT 2 cut(s) 95, 189
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 4 cut(s) 90, 123, 153, 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 263
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 157, 278
HspAI GCGC 1 cut(s) 236
LpnPI CCDG 3 cut(s) 83, 133, 231
MaeI CTAG 2 cut(s) 248, 269
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 1 cut(s) 102
MluCI AATT 2 cut(s) 83, 284
MlyI GAGTC 2 cut(s) 131, 328
MnlI CCTC 6 cut(s) 73, 88, 127, 137, 347, 348
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 159, 263
NlaIII CATG 2 cut(s) 157, 278
NmuCI GTSAC 1 cut(s) 97
PagI TCATGA 1 cut(s) 274
PfeI GAWTC 1 cut(s) 176
PleI GAGTC 2 cut(s) 131, 328
PpsI GAGTC 2 cut(s) 131, 328
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SchI GAGTC 2 cut(s) 131, 328
SetI ASST 4 cut(s) 11, 119, 216, 274
Sse9I AATT 2 cut(s) 83, 284
SsiI CCGC 3 cut(s) 41, 158, 204
SspMI CTAG 2 cut(s) 248, 269
TaaI ACNGT 2 cut(s) 95, 189
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 140
TasI AATT 2 cut(s) 83, 284
TfiI GAWTC 1 cut(s) 176
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 294
XapI RAATTY 2 cut(s) 83, 284
XspI CTAG 2 cut(s) 248, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.