Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001559.1

Orthogroup ID

OG0019972

Physical Location & Seq

Genomic Coordinates Reverse (-)

41264 .. 42027

Gene Structure 764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgctcttggcctctcttctcgttctcctttcatgcttaacagaaaccgtttatggaggcattctattatcttctctgcccaaaactcttaatgtctctgcttcgcctcacaaaccagaccaggttaatacacccggagtgttgttaaattttgttggaaacataatagccggagaagataaactcggcgtcgtatggtctctgaacaatacgaatttcccagttggtaccgacgcggcctataagacggtcaacatcaagctttgctacgcgccggtaagtcaagtgggcaagccggggaggaagacggaggacgacctcgacaaggacaagacatgccagatagagttctatactggaccttacaacgcctctatcaagtggcagtactacgagtcgactttggatcgccacgtgcctcacgcctcgtacttcgtacgcgcctacgtgaacgactctgctggtgttctggtggcttatggtcaaagcaccggaccgaacaaggactacaatatatttgtggttagcggaagccacaagaggcctaagatggtgtcgatttggttcagtgtcttcgttttgttcttctttgttgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

199

Amino Acids

21.92

Weight (kDa)

8.34

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	24 - 177	8.4e-41	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019972)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192371
rosa_laevigata	RLG00000004375
rosa_multiflora	Rmu_sc0001559.1_g000012 Rmu_sc0003108.1_g000003
rosa_roxburghii	Rroxscaffold_3G00263090
rosa_samantha	Rh7DG128500
rosa_wichuraiana	Rw7G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	398
AccII	CGCG	3 cut(s)	236, 272, 441
AciI	CCGC	2 cut(s)	236, 528
AclWI	GGATC	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	148, 214
AcvI	CACGTG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	4 cut(s)	229, 389, 431, 438
AfiI	CCNNNNNNNGG	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	100, 204
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	3 cut(s)	9, 237, 542
ApoI	RAATTY	2 cut(s)	148, 214
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	274, 443
AspS9I	GGNCC	2 cut(s)	359, 494
AsuC2I	CCSGG	2 cut(s)	135, 297
AvaII	GGWCC	2 cut(s)	359, 494
BanI	GGYRCC	1 cut(s)	227
BbrPI	CACGTG	1 cut(s)	415
BbsI	GAAGAC	2 cut(s)	311, 565
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	2 cut(s)	135, 297
BcoDI	GTCTC	2 cut(s)	100, 204
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	3 cut(s)	122, 135, 297
Bme18I	GGWCC	2 cut(s)	359, 494
BmgT120I	GGNCC	2 cut(s)	359, 494
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	122, 135, 297
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
BpiI	GAAGAC	2 cut(s)	311, 565
BpuMI	CCSGG	2 cut(s)	135, 297
BsaAI	YACGTR	2 cut(s)	415, 448
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	221, 361
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseNI	ACTGG	2 cut(s)	221, 361
Bsh1236I	CGCG	3 cut(s)	236, 272, 441
BshFI	GGCC	3 cut(s)	11, 239, 544
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	5 cut(s)	135, 171, 275, 296, 492
BsiWI	CGTACG	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	100, 204
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	11, 239, 544
Bso31I	GGTCTC	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	2 cut(s)	236, 528
BspANI	GGCC	3 cut(s)	11, 239, 544
BspFNI	CGCG	3 cut(s)	236, 272, 441
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	221, 361
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	406
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	49, 250
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	2 cut(s)	415, 448
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	546, 597
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstFNI	CGCG	3 cut(s)	236, 272, 441
BstHHI	GCGC	2 cut(s)	274, 443
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	100, 204
BstMBI	GATC	1 cut(s)	406
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	3 cut(s)	120, 133, 295
BstUI	CGCG	3 cut(s)	236, 272, 441
BstV2I	GAAGAC	2 cut(s)	311, 565
BsuRI	GGCC	3 cut(s)	11, 239, 544
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	2 cut(s)	274, 443
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	359, 494
CpoI	CGGWCCG	1 cut(s)	494
CseI	GACGC	2 cut(s)	178, 242
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	4 cut(s)	228, 388, 430, 437
CspI	CGGWCCG	1 cut(s)	494
CviAII	CATG	2 cut(s)	33, 336
CviJI	RGCY	8 cut(s)	11, 170, 239, 262, 295, 476, 534, 544
CviKI_1	RGCY	8 cut(s)	11, 170, 239, 262, 295, 476, 534, 544
CviQI	GTAC	4 cut(s)	228, 388, 430, 437
DdeI	CTNAG	2 cut(s)	546, 597
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	359, 494
Eco72I	CACGTG	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	36, 339
FaiI	YATR	9 cut(s)	34, 54, 164, 196, 243, 337, 354, 480, 515
FatI	CATG	2 cut(s)	32, 335
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
GlaI	GCGC	2 cut(s)	273, 442
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	11, 239, 544
HapII	CCGG	5 cut(s)	135, 171, 275, 296, 492
HgaI	GACGC	2 cut(s)	178, 242
HhaI	GCGC	2 cut(s)	274, 443
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	36, 339
Hin6I	GCGC	2 cut(s)	272, 441
HinP1I	GCGC	2 cut(s)	272, 441
HincII	GTYRAC	2 cut(s)	253, 399
HindII	GTYRAC	2 cut(s)	253, 399
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	395, 455
HpaII	CCGG	5 cut(s)	135, 171, 275, 296, 492
Hpy166II	GTNNAC	3 cut(s)	253, 399, 451
Hpy188I	TCNGA	1 cut(s)	204
Hpy8I	GTNNAC	3 cut(s)	253, 399, 451
Hpy99I	CGWCG	2 cut(s)	194, 236
HpyCH4III	ACNGT	2 cut(s)	49, 250
HpyCH4IV	ACGT	2 cut(s)	414, 447
HpyF3I	CTNAG	2 cut(s)	546, 597
HpySE526I	ACGT	2 cut(s)	414, 447
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	36, 339
HspAI	GCGC	2 cut(s)	272, 441
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	406
MabI	ACCWGGT	1 cut(s)	120
MaeII	ACGT	2 cut(s)	414, 447
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	6 cut(s)	8, 63, 188, 316, 565, 577
MluCI	AATT	2 cut(s)	148, 214
MlyI	GAGTC	2 cut(s)	404, 449
MmeI	TCCRAC	1 cut(s)	136
MseI	TTAA	4 cut(s)	38, 90, 126, 146
MspI	CCGG	5 cut(s)	135, 171, 275, 296, 492
MspR9I	CCNGG	3 cut(s)	122, 135, 297
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	3 cut(s)	236, 272, 441
NciI	CCSGG	2 cut(s)	135, 297
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	36, 339
NlaIV	GGNNCC	1 cut(s)	229
NmeAIII	GCCGAG	1 cut(s)	165
NspI	RCATGY	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	544
PctI	GAATGC	1 cut(s)	60
Pfl23II	CGTACG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	403, 449
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	403, 449
Ppu21I	YACGTR	2 cut(s)	415, 448
Psp6I	CCWGG	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	120
PspLI	CGTACG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	359, 494
PsrI	GAACNNNNNNTAC	2 cut(s)	491, 523
RsaI	GTAC	4 cut(s)	229, 389, 431, 438
RsaNI	GTAC	4 cut(s)	228, 388, 430, 437
Rsr2I	CGGWCCG	1 cut(s)	494
RsrII	CGGWCCG	1 cut(s)	494
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	4 cut(s)	38, 90, 126, 146
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	2 cut(s)	359, 494
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	2 cut(s)	404, 449
ScrFI	CCNGG	3 cut(s)	122, 135, 297
SetI	ASST	6 cut(s)	126, 264, 321, 364, 417, 450
SexAI	ACCWGGT	1 cut(s)	120
SinI	GGWCC	2 cut(s)	359, 494
Sse9I	AATT	2 cut(s)	148, 214
SseBI	AGGCCT	1 cut(s)	544
SsiI	CCGC	2 cut(s)	236, 528
StuI	AGGCCT	1 cut(s)	544
StyD4I	CCNGG	3 cut(s)	120, 133, 295
TaaI	ACNGT	2 cut(s)	49, 250
TaiI	ACGT	2 cut(s)	417, 450
TaqI	TCGA	3 cut(s)	321, 398, 557
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	2 cut(s)	148, 214
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	4 cut(s)	38, 90, 126, 146
Tru9I	TTAA	4 cut(s)	38, 90, 126, 146
TscAI	CASTG	1 cut(s)	574
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	359, 494
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	2 cut(s)	148, 214
XceI	RCATGY	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.