Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0019972

Physical Location & Seq

Genomic Coordinates Forward (+)

57028704 .. 57029681

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCATTACATGGTCTGATGCTCTTGGCCTCTCTTCTCGTTCTTCTTTCATGCTTGACAGAAACCGCTTATGGAGGCATTCTATTATCTTCTCTGCCCAACACTCTTAATGTCTCTGCTTCGCCTCACAAACCAGACCAGGTTAATACACCCGGAGTGTTGTTAAATTTTGTTGGAAACATAATAGCCGGAGAAGATAAACTCGGCGTCGTATGGTCTCTGAACAATACGAATTTCCCAGTTGGTACCGACGCGGCCTATAAGACGGTCAACATCAAGCTTTGCTACGCGCCGGTAAGTCAAGTGGGCAAGCCGGGGAGGAAGACGGAGGACGACCTCGACGAGGACAAGACATGCCAGATAGAGTTCTATACCGGACCTTACAACGCCTCTATCAAGTGGCAGTACTACGAGTCGACTTTGGATCGCAGCGTACCTCACGCCTCGTACTTCGTACGCGCCTACGTGAACGACTCTGCTGGTGTTCTGGTGGCTTATGGTCAAAAGCACCGGACCGAACAAGGACTACAATATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

179

Amino Acids

19.57

Weight (kDa)

5.74

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	30 - 172	1.1e-36	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019972)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192371
rosa_laevigata	RLG00000004375
rosa_multiflora	Rmu_sc0001559.1_g000012 Rmu_sc0003108.1_g000003
rosa_roxburghii	Rroxscaffold_3G00263090
rosa_samantha	Rh7DG128500
rosa_wichuraiana	Rw7G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	416
AccII	CGCG	3 cut(s)	254, 290, 459
AciI	CCGC	2 cut(s)	66, 254
AclWI	GGATC	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	166, 232
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	5 cut(s)	247, 407, 435, 449, 456
AfiI	CCNNNNNNNGG	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	2 cut(s)	118, 222
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	2 cut(s)	27, 255
ApeKI	GCWGC	1 cut(s)	429
ApoI	RAATTY	2 cut(s)	166, 232
Asp718I	GGTACC	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	292, 461
AspS9I	GGNCC	2 cut(s)	377, 513
AsuC2I	CCSGG	2 cut(s)	153, 315
AvaII	GGWCC	2 cut(s)	377, 513
BanI	GGYRCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	441
BciT130I	CCWGG	1 cut(s)	140
BcnI	CCSGG	2 cut(s)	153, 315
BcoDI	GTCTC	2 cut(s)	118, 222
BisI	GCNGC	2 cut(s)	255, 430
BlsI	GCNGC	2 cut(s)	256, 431
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	3 cut(s)	140, 153, 315
Bme18I	GGWCC	2 cut(s)	377, 513
BmgT120I	GGNCC	2 cut(s)	377, 513
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	3 cut(s)	140, 153, 315
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	153, 315
BsaAI	YACGTR	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	314
BsaWI	WCCGGW	2 cut(s)	374, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	441
Bsh1236I	CGCG	3 cut(s)	254, 290, 459
BshFI	GGCC	2 cut(s)	29, 257
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	6 cut(s)	153, 189, 293, 314, 375, 511
BsiWI	CGTACG	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	118, 222
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	29, 257
Bso31I	GGTCTC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	2 cut(s)	66, 254
BspANI	GGCC	2 cut(s)	29, 257
BspFNI	CGCG	3 cut(s)	254, 290, 459
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	1 cut(s)	424
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	1 cut(s)	311
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstFNI	CGCG	3 cut(s)	254, 290, 459
BstHHI	GCGC	2 cut(s)	292, 461
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	2 cut(s)	118, 222
BstMBI	GATC	1 cut(s)	424
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	3 cut(s)	138, 151, 313
BstUI	CGCG	3 cut(s)	254, 290, 459
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	29, 257
Cac8I	GCNNGC	1 cut(s)	311
CfoI	GCGC	2 cut(s)	292, 461
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	377, 513
CpoI	CGGWCCG	1 cut(s)	513
CseI	GACGC	2 cut(s)	196, 260
CsiI	ACCWGGT	1 cut(s)	138
Csp6I	GTAC	5 cut(s)	246, 406, 434, 448, 455
CspI	CGGWCCG	1 cut(s)	513
CviAII	CATG	3 cut(s)	11, 51, 354
CviJI	RGCY	6 cut(s)	29, 188, 257, 280, 313, 494
CviKI_1	RGCY	6 cut(s)	29, 188, 257, 280, 313, 494
CviQI	GTAC	5 cut(s)	246, 406, 434, 448, 455
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	377, 513
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	14, 54, 357
FatI	CATG	3 cut(s)	10, 50, 353
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	255, 430
Fsp4HI	GCNGC	2 cut(s)	255, 430
GlaI	GCGC	2 cut(s)	291, 460
GluI	GCNGC	2 cut(s)	255, 430
HaeIII	GGCC	2 cut(s)	29, 257
HapII	CCGG	6 cut(s)	153, 189, 293, 314, 375, 511
HgaI	GACGC	2 cut(s)	196, 260
HhaI	GCGC	2 cut(s)	292, 461
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	14, 54, 357
Hin6I	GCGC	2 cut(s)	290, 459
HinP1I	GCGC	2 cut(s)	290, 459
HincII	GTYRAC	2 cut(s)	271, 417
HindII	GTYRAC	2 cut(s)	271, 417
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	2 cut(s)	413, 473
HpaII	CCGG	6 cut(s)	153, 189, 293, 314, 375, 511
Hpy166II	GTNNAC	3 cut(s)	271, 417, 469
Hpy188I	TCNGA	2 cut(s)	18, 222
Hpy8I	GTNNAC	3 cut(s)	271, 417, 469
Hpy99I	CGWCG	3 cut(s)	212, 254, 344
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	465
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	14, 54, 357
HspAI	GCGC	2 cut(s)	290, 459
KpnI	GGTACC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	424
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	1 cut(s)	9
MabI	ACCWGGT	1 cut(s)	138
MaeII	ACGT	1 cut(s)	465
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	5 cut(s)	26, 35, 81, 206, 334
MluCI	AATT	2 cut(s)	166, 232
MlyI	GAGTC	2 cut(s)	422, 467
MmeI	TCCRAC	1 cut(s)	154
MseI	TTAA	3 cut(s)	108, 144, 164
MspI	CCGG	6 cut(s)	153, 189, 293, 314, 375, 511
MspR9I	CCNGG	3 cut(s)	140, 153, 315
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	3 cut(s)	254, 290, 459
NciI	CCSGG	2 cut(s)	153, 315
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	3 cut(s)	14, 54, 357
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	183
NspI	RCATGY	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	78
Pfl23II	CGTACG	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	256, 431
PleI	GAGTC	2 cut(s)	421, 467
PpsI	GAGTC	2 cut(s)	421, 467
Ppu21I	YACGTR	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspLI	CGTACG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	377, 513
PsrI	GAACNNNNNNTAC	1 cut(s)	510
RsaI	GTAC	5 cut(s)	247, 407, 435, 449, 456
RsaNI	GTAC	5 cut(s)	246, 406, 434, 448, 455
Rsr2I	CGGWCCG	1 cut(s)	513
RsrII	CGGWCCG	1 cut(s)	513
SalI	GTCGAC	1 cut(s)	415
SaqAI	TTAA	3 cut(s)	108, 144, 164
SatI	GCNGC	2 cut(s)	255, 430
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	2 cut(s)	377, 513
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	2 cut(s)	422, 467
ScrFI	CCNGG	3 cut(s)	140, 153, 315
SetI	ASST	6 cut(s)	144, 282, 339, 382, 439, 468
SexAI	ACCWGGT	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	9
SinI	GGWCC	2 cut(s)	377, 513
Sse9I	AATT	2 cut(s)	166, 232
SsiI	CCGC	2 cut(s)	66, 254
StyD4I	CCNGG	3 cut(s)	138, 151, 313
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	339, 416
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	2 cut(s)	166, 232
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	3 cut(s)	108, 144, 164
Tru9I	TTAA	3 cut(s)	108, 144, 164
TseI	GCWGC	1 cut(s)	429
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	377, 513
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	2 cut(s)	166, 232
XceI	RCATGY	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.