Rmu_sc0001578.1_g000021

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001578.1
OG0031140
Physical Location & Seq
Reverse (-)
62589 .. 63425
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001578.1_g000021.1.cds

Sequence Viewer

Length: 252 bp
atggagatggtcaagagtgcgatggtggtggtggtgctagttttggtggcgatggtgccgagtctggaggcgattgaatcgccgcagtacacggtggtgcactgggaatcggagtttgagataagagaatacagagccggcgcgtggatgtctgctcctgttaaagacatctcctttgaaaaggccaccagaaatggcttccacaggctgttccagtacatccaaggtaggcctggcaacgggcgggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

83

Amino Acids

9.47

Weight (kDa)

6.72

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031140)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001578.1_g000021 Rmu_sc0011386.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccII CGCG 1 cut(s) 143
AciI CCGC 2 cut(s) 83, 244
AfaI GTAC 2 cut(s) 89, 218
AfiI CCNNNNNNNGG 2 cut(s) 144, 239
AgsI TTSAA 2 cut(s) 77, 179
AjnI CCWGG 1 cut(s) 232
AleI CACNNNNGTG 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 98
AoxI GGCC 2 cut(s) 183, 230
ApaLI GTGCAC 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 2 cut(s) 16, 46
BciT130I CCWGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 239
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 107, 214
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 153, 219
BseLI CCNNNNNNNGG 2 cut(s) 144, 239
BseNI ACTGG 2 cut(s) 107, 214
BseSI GKGCMC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 185, 232
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 144, 239
BsnI GGCC 2 cut(s) 185, 232
Bsp1286I GDGCHC 1 cut(s) 102
BspACI CCGC 2 cut(s) 83, 244
BspANI GGCC 2 cut(s) 185, 232
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 2 cut(s) 107, 214
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 139
BstF5I GGATG 2 cut(s) 153, 219
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 1 cut(s) 143
BsuRI GGCC 2 cut(s) 185, 232
BtgZI GCGATG 2 cut(s) 35, 65
BtsCI GGATG 2 cut(s) 153, 219
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 137
Csp6I GTAC 2 cut(s) 88, 217
CviJI RGCY 5 cut(s) 137, 185, 198, 208, 232
CviKI_1 RGCY 5 cut(s) 137, 185, 198, 208, 232
CviQI GTAC 2 cut(s) 88, 217
Eco130I CCWWGG 1 cut(s) 223
Eco147I AGGCCT 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaiI YATR 1 cut(s) 250
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 2 cut(s) 160, 206
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 185, 232
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 3 cut(s) 61, 77, 107
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 90, 100
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 13, 65
Hpy8I GTNNAC 2 cut(s) 90, 100
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 100
HspAI GCGC 1 cut(s) 141
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 9 cut(s) 50, 88, 151, 171, 190, 202, 219, 227, 246
MaeI CTAG 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 143
NaeI GCCGGC 1 cut(s) 139
NgoMIV GCCGGC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 95
PceI AGGCCT 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 77, 107
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 57
RsaI GTAC 2 cut(s) 89, 218
RsaNI GTAC 2 cut(s) 88, 217
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 83
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 102
SetI ASST 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 2 cut(s) 83, 244
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 94
TatI WGTACW 2 cut(s) 87, 216
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 77, 107
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 107
TspRI CASTG 1 cut(s) 107
VneI GTGCAC 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.