Rmu_sc0011386.1_g000002

Heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011386.1
OG0031140
Physical Location & Seq
Forward (+)
10059 .. 10283
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011386.1_g000002.1.cds

Sequence Viewer

Length: 225 bp
atggagatggtcaagagtgcgatggtggtggtggtgctagttttggtggcgatggtgccgagtctggaggcgattgaatcgccgcagtacacggtggtgcactgggaatcggagtttgagataagagaatacagagccggcgcgtggatgtctgctcctgttaaagacatctcctttgaaaaggccaccagaaatggcttccacaggtactgccccccaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

74

Amino Acids

8.44

Weight (kDa)

5.57

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031140)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001578.1_g000021 Rmu_sc0011386.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 83
AfaI GTAC 2 cut(s) 89, 209
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 77, 179
AleI CACNNNNGTG 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 210
AoxI GGCC 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 2 cut(s) 16, 46
BfaI CTAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 144
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 102
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 185
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 143
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 1 cut(s) 143
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 2 cut(s) 35, 65
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 210
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 137
Csp6I GTAC 2 cut(s) 88, 208
CviJI RGCY 3 cut(s) 137, 185, 198
CviKI_1 RGCY 3 cut(s) 137, 185, 198
CviQI GTAC 2 cut(s) 88, 208
DdeI CTNAG 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 3 cut(s) 61, 77, 107
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 90, 100
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 13, 65
Hpy8I GTNNAC 2 cut(s) 90, 100
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 222
HspAI GCGC 1 cut(s) 141
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 50, 88, 151, 171, 190, 202
MaeI CTAG 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 102
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 143
NaeI GCCGGC 1 cut(s) 139
NgoMIV GCCGGC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 77, 107
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 210
RsaI GTAC 2 cut(s) 89, 209
RsaNI GTAC 2 cut(s) 88, 208
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 83
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 102
SetI ASST 2 cut(s) 209, 223
SmiMI CAYNNNNRTG 1 cut(s) 95
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 94
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 77, 107
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 107
TspRI CASTG 1 cut(s) 107
VneI GTGCAC 1 cut(s) 98
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.