Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001629.1

Orthogroup ID

OG0023071

Physical Location & Seq

Genomic Coordinates Reverse (-)

32441 .. 33494

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001629.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgagctatgtggcttcaaatcccatccattggaaagccaaagttagcatcgaccgttctgtcttgctcactctgaaatgtgggttgcatagaatgatcattgctggggatccagaatgtgttagtgagacatggatgagtaatgtacagagtttcgggatgatgactggtgaggcagcctactctgcatgttcaccggtccaagcagcagttgggatagctgcatgtggcctcagacctgagattccaaaggactatccacaaatgctgagatccttgatgaccaagtgctggaacaactcccccttaaagcgtcctcagttctttgaaattctatcactattgctacggaccaacaacaaagtaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.72

Weight (kDa)

9.3

Isoelectric Point (pI)

67.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023071)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001538.1_g000009 Rmu_sc0001629.1_g000015 Rmu_sc0003459.1_g000013 Rmu_sc0021503.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccB7I	CCANNNNNTGG	2 cut(s)	30, 291
AclWI	GGATC	3 cut(s)	104, 117, 267
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	30, 291
AgeI	ACCGGT	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	18, 329
AluBI	AGCT	2 cut(s)	6, 221
AluI	AGCT	2 cut(s)	6, 221
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	104, 117, 267
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	176, 206, 221
ApoI	RAATTY	1 cut(s)	330
AsiGI	ACCGGT	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	199, 351
AsuHPI	GGTGA	2 cut(s)	182, 186
AvaII	GGWCC	2 cut(s)	199, 351
BamHI	GGATCC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	188, 208, 218
BccI	CCATC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	122
BisI	GCNGC	3 cut(s)	177, 207, 222
BlsI	GCNGC	3 cut(s)	178, 208, 223
Bme18I	GGWCC	2 cut(s)	199, 351
BmgT120I	GGNCC	2 cut(s)	199, 351
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 291
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	99
BseGI	GGATG	3 cut(s)	24, 141, 165
BseLI	CCNNNNNNNGG	2 cut(s)	30, 291
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	4 cut(s)	231, 247, 260, 332
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	188, 208, 218
BseYI	CCCAGC	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	30, 291
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	231
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	96, 109, 272
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	232, 246, 261, 331
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	3 cut(s)	104, 117, 267
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	3 cut(s)	96, 109, 272
Bst4CI	ACNGT	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	145
BstDEI	CTNAG	4 cut(s)	233, 240, 269, 318
BstF5I	GGATG	3 cut(s)	24, 141, 165
BstKTI	GATC	3 cut(s)	99, 112, 275
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	96, 109, 272
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	2 cut(s)	192, 228
BstV1I	GCAGC	3 cut(s)	188, 208, 218
BstX2I	RGATCY	2 cut(s)	109, 272
BstYI	RGATCY	2 cut(s)	109, 272
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	24, 141, 165
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	199, 351
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	196
CviAII	CATG	3 cut(s)	132, 189, 225
CviJI	RGCY	6 cut(s)	6, 14, 38, 179, 221, 231
CviKI_1	RGCY	6 cut(s)	6, 14, 38, 179, 221, 231
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	4 cut(s)	233, 240, 269, 318
DpnI	GATC	3 cut(s)	98, 111, 274
DpnII	GATC	3 cut(s)	96, 109, 272
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	199, 351
FaeI	CATG	3 cut(s)	135, 192, 228
FaiI	YATR	5 cut(s)	9, 90, 133, 190, 226
FatI	CATG	3 cut(s)	131, 188, 224
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	177, 207, 222
FokI	GGATG	3 cut(s)	11, 148, 172
Fsp4HI	GCNGC	3 cut(s)	177, 207, 222
GluI	GCNGC	3 cut(s)	177, 207, 222
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	135, 192, 228
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	182, 186
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	75, 236
Hpy188III	TCNNGA	2 cut(s)	113, 157
Hpy8I	GTNNAC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	3 cut(s)	88, 188, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	4 cut(s)	233, 240, 269, 318
Hsp92II	CATG	3 cut(s)	135, 192, 228
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	96, 109, 272
LpnPI	CCDG	6 cut(s)	90, 126, 153, 210, 252, 277
Lsp1109I	GCAGC	3 cut(s)	188, 208, 218
LweI	GCATC	1 cut(s)	57
MalI	GATC	3 cut(s)	98, 111, 274
MboI	GATC	3 cut(s)	96, 109, 272
MflI	RGATCY	2 cut(s)	109, 272
MluCI	AATT	1 cut(s)	330
MnlI	CCTC	3 cut(s)	166, 242, 327
MseI	TTAA	1 cut(s)	308
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	3 cut(s)	96, 109, 272
NlaIII	CATG	3 cut(s)	135, 192, 228
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	2 cut(s)	192, 228
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	2 cut(s)	30, 291
PinAI	ACCGGT	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	178, 208, 223
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	2 cut(s)	199, 351
PsuI	RGATCY	2 cut(s)	109, 272
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	3 cut(s)	177, 207, 222
Sau3AI	GATC	3 cut(s)	96, 109, 272
Sau96I	GGNCC	2 cut(s)	199, 351
SetI	ASST	4 cut(s)	8, 223, 241, 371
SfaNI	GCATC	1 cut(s)	57
SinI	GGWCC	2 cut(s)	199, 351
Sse9I	AATT	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	330
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TseI	GCWGC	3 cut(s)	176, 206, 221
TspGWI	ACGGA	1 cut(s)	364
Van91I	CCANNNNNTGG	2 cut(s)	30, 291
VpaK11BI	GGWCC	2 cut(s)	199, 351
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	2 cut(s)	192, 228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.