Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003459.1

Orthogroup ID

OG0023071

Physical Location & Seq

Genomic Coordinates Reverse (-)

57303 .. 58228

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003459.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgtcatactatctaagctatgtggcttcaaatcccatccattggaaagccaaagttagcatcgaccgttctgtcttgctcactctgaaatgtgggttgcatagaatgatcattgctggtgatccagaatgtgttagtgagacatggatgagtaatgtatatagtttcgggatggtgactggtgaggcagcctactccgcatgttcaccggtccaagcagcagttgggatagctgcttgtggcctcagacctgagattccaaaggactatccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

91

Amino Acids

9.89

Weight (kDa)

6.69

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023071)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001538.1_g000009 Rmu_sc0001629.1_g000015 Rmu_sc0003459.1_g000013 Rmu_sc0021503.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	42
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	30
AluBI	AGCT	2 cut(s)	18, 233
AluI	AGCT	2 cut(s)	18, 233
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	188, 218, 233
AsiGI	ACCGGT	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	4 cut(s)	131, 187, 194, 198
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	200, 220, 230
BccI	CCATC	2 cut(s)	44, 166
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	189, 219, 234
BlsI	GCNGC	3 cut(s)	190, 220, 235
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	111
BseGI	GGATG	3 cut(s)	36, 153, 177
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	243, 259
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	3 cut(s)	200, 220, 230
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	243
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	108, 121
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	244, 258
BspPI	GGATC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	208
BssMI	GATC	2 cut(s)	108, 121
Bst4CI	ACNGT	1 cut(s)	68
BstDEI	CTNAG	3 cut(s)	14, 245, 252
BstF5I	GGATG	3 cut(s)	36, 153, 177
BstKTI	GATC	2 cut(s)	111, 124
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	108, 121
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	200, 220, 230
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	36, 153, 177
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	144, 201
CviJI	RGCY	6 cut(s)	18, 26, 50, 191, 233, 243
CviKI_1	RGCY	6 cut(s)	18, 26, 50, 191, 233, 243
DdeI	CTNAG	3 cut(s)	14, 245, 252
DpnI	GATC	2 cut(s)	110, 123
DpnII	GATC	2 cut(s)	108, 121
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	211
FaeI	CATG	2 cut(s)	147, 204
FaiI	YATR	8 cut(s)	7, 21, 102, 145, 160, 162, 202, 274
FatI	CATG	2 cut(s)	143, 200
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	189, 219, 234
FokI	GGATG	3 cut(s)	23, 160, 184
Fsp4HI	GCNGC	3 cut(s)	189, 219, 234
GluI	GCNGC	3 cut(s)	189, 219, 234
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	2 cut(s)	147, 204
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	4 cut(s)	131, 187, 194, 198
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	87, 248
Hpy188III	TCNNGA	2 cut(s)	125, 169
Hpy8I	GTNNAC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	14, 245, 252
Hsp92II	CATG	2 cut(s)	147, 204
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	108, 121
LpnPI	CCDG	5 cut(s)	102, 138, 165, 222, 264
Lsp1109I	GCAGC	3 cut(s)	200, 220, 230
LweI	GCATC	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	110, 123
MboI	GATC	2 cut(s)	108, 121
MnlI	CCTC	2 cut(s)	178, 254
MspI	CCGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	108, 121
NlaIII	CATG	2 cut(s)	147, 204
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	42
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	190, 220, 235
PspPI	GGNCC	1 cut(s)	211
SatI	GCNGC	3 cut(s)	189, 219, 234
Sau3AI	GATC	2 cut(s)	108, 121
Sau96I	GGNCC	1 cut(s)	211
SetI	ASST	3 cut(s)	20, 235, 253
SfaNI	GCATC	1 cut(s)	69
SinI	GGWCC	1 cut(s)	211
SsiI	CCGC	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	3 cut(s)	188, 218, 233
Tsp45I	GTSAC	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.