Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001694.1

Orthogroup ID

OG0031149

Physical Location & Seq

Genomic Coordinates Forward (+)

195366 .. 197263

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgacagttcgtgaaacatttgatttctccagacgttgcctaggagttggaacaaggtatgatatactagtagagttgtctagatgggagaaagatgcatgtatcaaaccagatcctgggattgatgcatacatgaaagccacatcaatggcaggacaggaaacaagtttgatcacagattatgttctcatgatacttggattagatatctgtgctgatattatggtgggtgatgacatgagaaggggaatatctggtggacaaaagaagcgtgtcacgactggcatggttggacagttccacaacctttcagattgtcatattctggatgtgtcaatggtcatctctctcttgcaacctgttcctgagacgtatgatctttttgatgatgttatccttctttccgagggtcagatagtttatcaaggcccacgtgagaatgtccttgagttctttgaatatataggattcaaatgccctgacagaaaaggtgttgcagacttcttgcaagcagcgttcagctccttccatgttggccaactacttggggaagaattaagggttccttatgataaaagacatgcccatcctgctgctgtggttaaggaaaaaacagaaatgaaagctgggacacaagctgattcagcaaagtatttgggggaaatgtttttcagtctcattaacgtcatgtttaatggagtggcagagcttgcaatgacagttttccggcttccagtgttctttaaacagagggatgccttgttctatccagtgtgtgcttttgctttgcccatttgggtgaccagaattcctgtttctgtgttggaatctgcgatatggatcatttttacatattacaccataagatttgcacctgatactagtagttactatatcaaaaacctcttgcaggccattctaggagttcccaagataaaagacggctacaaccctgctacatggatgttagaggtcagttctgctgcagttgaggttcaaaataacattgattttgccgaaatatatgcaaactctgagctgtataggagcgttcaagaacttatcaaggaattgagcacaccactcccaggctccaaggacctttacttccccacccaatactcgcaaagcttcccaactcaatgcaaggcttgctgttggaaacaacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

390

Amino Acids

44.08

Weight (kDa)

5.3

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_7	PF19055	119 - 168	5.2e-06	ABC-2 type transporter
ABC2_membrane	PF01061	209 - 296	1.1e-13	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031149)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001694.1_g000036
rosa_roxburghii	Rroxscaffold_1G00025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	116
AclWI	GGATC	2 cut(s)	107, 848
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	807
AcvI	CACGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	116, 910, 1088
AgsI	TTSAA	4 cut(s)	458, 472, 998, 1055
AhlI	ACTAGT	2 cut(s)	67, 881
AjnI	CCWGG	2 cut(s)	115, 1087
AloI	GAACNNNNNNTCC	2 cut(s)	746, 778
AluBI	AGCT	6 cut(s)	522, 626, 638, 709, 1039, 1131
AluI	AGCT	6 cut(s)	522, 626, 638, 709, 1039, 1131
Alw21I	GWGCWC	1 cut(s)	1079
Alw26I	GTCTC	2 cut(s)	362, 680
AlwI	GGATC	2 cut(s)	107, 848
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	427, 535, 912
ApeKI	GCWGC	3 cut(s)	512, 593, 983
ApoI	RAATTY	1 cut(s)	807
AspA2I	CCTAGG	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	428, 1099
AsuHPI	GGTGA	2 cut(s)	242, 811
AvaII	GGWCC	1 cut(s)	1099
AvrII	CCTAGG	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	1079
BbvI	GCAGC	3 cut(s)	524, 580, 970
BccI	CCATC	2 cut(s)	78, 594
BceAI	ACGGC	1 cut(s)	958
BcgI	CGANNNNNNTGC	2 cut(s)	1007, 1041
BciT130I	CCWGG	2 cut(s)	117, 1089
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	362, 680
BcuI	ACTAGT	2 cut(s)	67, 881
BfaI	CTAG	6 cut(s)	41, 68, 81, 882, 920, 1171
BfmI	CTRYAG	1 cut(s)	984
BisI	GCNGC	3 cut(s)	513, 594, 984
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	3 cut(s)	514, 595, 985
Bme1390I	CCNGG	2 cut(s)	117, 1089
Bme18I	GGWCC	1 cut(s)	1099
BmgT120I	GGNCC	2 cut(s)	428, 1099
BmiI	GGNNCC	2 cut(s)	564, 1093
BmrFI	CCNGG	2 cut(s)	117, 1089
BmsI	GCATC	3 cut(s)	85, 115, 745
BpmI	CTGGAG	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	839
BsaJI	CCNNGG	5 cut(s)	40, 116, 405, 1087, 1095
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 910, 1088
Bse1I	ACTGG	3 cut(s)	286, 734, 770
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	839
BseBI	CCWGG	2 cut(s)	117, 1089
BseDI	CCNNGG	5 cut(s)	40, 116, 405, 1087, 1095
BseGI	GGATG	4 cut(s)	334, 586, 760, 969
BseJI	GATNNNNATC	1 cut(s)	839
BseLI	CCNNNNNNNGG	3 cut(s)	116, 910, 1088
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	2 cut(s)	357, 1026
BseNI	ACTGG	3 cut(s)	286, 734, 770
BseXI	GCAGC	3 cut(s)	524, 580, 970
BseYI	CCCAGC	1 cut(s)	626
BshFI	GGCC	3 cut(s)	429, 537, 914
BsiHKAI	GWGCWC	1 cut(s)	1079
BsiSI	CCGG	1 cut(s)	727
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	3 cut(s)	116, 910, 1088
BsmAI	GTCTC	2 cut(s)	362, 680
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	643
BsnI	GGCC	3 cut(s)	429, 537, 914
Bsp1286I	GDGCHC	1 cut(s)	1079
Bsp143I	GATC	4 cut(s)	112, 171, 376, 840
BspANI	GGCC	3 cut(s)	429, 537, 914
BspCNI	CTCAG	2 cut(s)	358, 1027
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	564, 1093
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	2 cut(s)	107, 848
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	3 cut(s)	286, 734, 770
BssECI	CCNNGG	5 cut(s)	40, 116, 405, 1087, 1095
BssMI	GATC	4 cut(s)	112, 171, 376, 840
BssT1I	CCWWGG	2 cut(s)	40, 1095
Bst2UI	CCWGG	2 cut(s)	117, 1089
Bst4CI	ACNGT	3 cut(s)	7, 297, 721
BstAPI	GCANNNNNTGC	2 cut(s)	710, 1152
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	4 cut(s)	510, 711, 912, 1153
BstDEI	CTNAG	2 cut(s)	366, 1035
BstEII	GGTNACC	1 cut(s)	799
BstENI	CCTNNNNNAGG	1 cut(s)	908
BstF5I	GGATG	4 cut(s)	334, 586, 760, 969
BstKTI	GATC	4 cut(s)	115, 174, 379, 843
BstMAI	GTCTC	2 cut(s)	362, 680
BstMBI	GATC	4 cut(s)	112, 171, 376, 840
BstMWI	GCNNNNNNNGC	4 cut(s)	590, 644, 710, 1152
BstNI	CCWGG	2 cut(s)	117, 1089
BstNSI	RCATGY	2 cut(s)	102, 584
BstPI	GGTNACC	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	115, 1087
BstSFI	CTRYAG	1 cut(s)	984
BstV1I	GCAGC	3 cut(s)	524, 580, 970
BstX2I	RGATCY	1 cut(s)	112
BstXI	CCANNNNNNTGG	2 cut(s)	148, 545
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	429, 537, 914
BtsCI	GGATG	4 cut(s)	334, 586, 760, 969
BtsIMutI	CAGTG	2 cut(s)	741, 777
Cac8I	GCNNGC	4 cut(s)	510, 711, 912, 1153
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	428, 1099
CviAII	CATG	9 cut(s)	99, 133, 190, 238, 286, 530, 581, 688, 960
DdeI	CTNAG	2 cut(s)	366, 1035
DpnI	GATC	4 cut(s)	114, 173, 378, 842
DpnII	GATC	4 cut(s)	112, 171, 376, 840
DraI	TTTAAA	1 cut(s)	745
EaeI	YGGCCR	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	40, 1095
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	1099
Eco72I	CACGTG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	799
EcoNI	CCTNNNNNAGG	1 cut(s)	908
EcoO109I	RGGNCCY	1 cut(s)	1099
EcoO65I	GGTNACC	1 cut(s)	799
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	115, 1087
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	40, 1095
EcoT22I	ATGCAT	2 cut(s)	100, 130
ErhI	CCWWGG	2 cut(s)	40, 1095
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	9 cut(s)	102, 136, 193, 241, 289, 533, 584, 691, 963
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	9 cut(s)	98, 132, 189, 237, 285, 529, 580, 687, 959
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	513, 594, 984
FokI	GGATG	4 cut(s)	341, 573, 767, 976
Fsp4HI	GCNGC	3 cut(s)	513, 594, 984
FspBI	CTAG	6 cut(s)	41, 68, 81, 882, 920, 1171
GluI	GCNGC	3 cut(s)	513, 594, 984
GsaI	CCCAGC	1 cut(s)	630
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	3 cut(s)	429, 537, 914
HapII	CCGG	1 cut(s)	727
Hin1II	CATG	9 cut(s)	102, 136, 193, 241, 289, 533, 584, 691, 963
HindIII	AAGCTT	1 cut(s)	1129
HinfI	GANTC	3 cut(s)	468, 641, 827
HpaII	CCGG	1 cut(s)	727
HphI	GGTGA	2 cut(s)	242, 811
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	313, 406, 414, 1036
Hpy188III	TCNNGA	8 cut(s)	11, 30, 81, 190, 277, 326, 365, 1055
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	237, 407, 535
HpyCH4III	ACNGT	3 cut(s)	7, 297, 721
HpyCH4IV	ACGT	4 cut(s)	34, 371, 433, 684
HpyF10VI	GCNNNNNNNGC	4 cut(s)	590, 644, 710, 1152
HpyF3I	CTNAG	2 cut(s)	366, 1035
HpySE526I	ACGT	4 cut(s)	34, 371, 433, 684
Hsp92II	CATG	9 cut(s)	102, 136, 193, 241, 289, 533, 584, 691, 963
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	112, 171, 376, 840
LmnI	GCTCC	3 cut(s)	527, 1047, 1097
Lsp1109I	GCAGC	3 cut(s)	524, 580, 970
LweI	GCATC	3 cut(s)	85, 115, 745
MaeI	CTAG	6 cut(s)	41, 68, 81, 882, 920, 1171
MaeII	ACGT	4 cut(s)	34, 371, 433, 684
MaeIII	GTNAC	3 cut(s)	274, 799, 887
MalI	GATC	4 cut(s)	114, 173, 378, 842
MboI	GATC	4 cut(s)	112, 171, 376, 840
MboII	GAAGA	1 cut(s)	563
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	1079
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	3 cut(s)	554, 807, 1070
MluNI	TGGCCA	1 cut(s)	537
MmeI	TCCRAC	4 cut(s)	28, 271, 804, 1139
MnlI	CCTC	5 cut(s)	400, 744, 914, 964, 985
Mox20I	TGGCCA	1 cut(s)	537
Mph1103I	ATGCAT	2 cut(s)	100, 130
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	5 cut(s)	557, 603, 681, 693, 744
MslI	CAYNNNNRTG	2 cut(s)	146, 797
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	1 cut(s)	727
MspR9I	CCNGG	2 cut(s)	117, 1089
MvaI	CCWGG	2 cut(s)	117, 1089
MwoI	GCNNNNNNNGC	4 cut(s)	590, 644, 710, 1152
NdeII	GATC	4 cut(s)	112, 171, 376, 840
NlaIII	CATG	9 cut(s)	102, 136, 193, 241, 289, 533, 584, 691, 963
NlaIV	GGNNCC	2 cut(s)	564, 1093
NmuCI	GTSAC	2 cut(s)	274, 799
NsiI	ATGCAT	2 cut(s)	100, 130
NspI	RCATGY	2 cut(s)	102, 584
PagI	TCATGA	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	468, 641, 827
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	3 cut(s)	514, 595, 985
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	1099
Psp5II	RGGWCCY	1 cut(s)	1099
Psp6I	CCWGG	2 cut(s)	115, 1087
PspCI	CACGTG	1 cut(s)	434
PspEI	GGTNACC	1 cut(s)	799
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	2 cut(s)	115, 1087
PspN4I	GGNNCC	2 cut(s)	564, 1093
PspPI	GGNCC	2 cut(s)	428, 1099
PspPPI	RGGWCCY	1 cut(s)	1099
PstI	CTGCAG	1 cut(s)	988
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	112
RseI	CAYNNNNRTG	2 cut(s)	146, 797
SaqAI	TTAA	5 cut(s)	557, 603, 681, 693, 744
SatI	GCNGC	3 cut(s)	513, 594, 984
Sau3AI	GATC	4 cut(s)	112, 171, 376, 840
Sau96I	GGNCC	2 cut(s)	428, 1099
ScrFI	CCNGG	2 cut(s)	117, 1089
SduI	GDGCHC	1 cut(s)	1079
SfaNI	GCATC	3 cut(s)	85, 115, 745
SfcI	CTRYAG	1 cut(s)	984
SinI	GGWCC	1 cut(s)	1099
SmiMI	CAYNNNNRTG	2 cut(s)	146, 797
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SpeI	ACTAGT	2 cut(s)	67, 881
Sse9I	AATT	3 cut(s)	554, 807, 1070
SspMI	CTAG	6 cut(s)	41, 68, 81, 882, 920, 1171
StyD4I	CCNGG	2 cut(s)	115, 1087
StyI	CCWWGG	2 cut(s)	40, 1095
TaaI	ACNGT	3 cut(s)	7, 297, 721
TaiI	ACGT	4 cut(s)	37, 374, 436, 687
TasI	AATT	3 cut(s)	554, 807, 1070
TfiI	GAWTC	3 cut(s)	468, 641, 827
Tru1I	TTAA	5 cut(s)	557, 603, 681, 693, 744
Tru9I	TTAA	5 cut(s)	557, 603, 681, 693, 744
TscAI	CASTG	2 cut(s)	741, 777
TseFI	GTSAC	2 cut(s)	274, 799
TseI	GCWGC	3 cut(s)	512, 593, 983
Tsp45I	GTSAC	2 cut(s)	274, 799
TspDTI	ATGAA	2 cut(s)	149, 635
TspRI	CASTG	2 cut(s)	741, 777
Van91I	CCANNNNNTGG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	1099
XagI	CCTNNNNNAGG	1 cut(s)	908
XapI	RAATTY	1 cut(s)	807
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	2 cut(s)	102, 584
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	6 cut(s)	41, 68, 81, 882, 920, 1171
Zsp2I	ATGCAT	2 cut(s)	100, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.