Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0031149

Physical Location & Seq

Genomic Coordinates Reverse (-)

31784917 .. 31786583

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00025290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAAGCTGGGACACAAGCTGATTCAGCAAATTATTGGGGGGCAATGTTTTTCAGTCTCATTAACGTCATGTTTAATGGAGTGGCAGAGCTTGCAATGACAGTTTTCCGGCTTCCAGTGTTCTTTAAACAGAGGGATGCCTTGTTCTATCCAGTGTGTGTTTTTGCTTTGCCCATTTGGGTGACCAGAATTCCTGTTTCAGTGTTGGAATCTGTGATATGGATCATTTTTACCTATTACACCATAGGATTTGCACCTGATCCTAGTAGTTACTATATCAAAAACCTCTTGCAGGCCATTCCAGGAGTTCCCATGATAAAAGACGGCTACAACCCTGCTACATGGATGTTAGAGGTCAGCTCTGCTGCAGTTGAGGTTCAAAATAACATTGATTTTGGTGAAATATATGCAAACTCTGAGCTGTATAGGAGCGTTCAAGAACTTATCAAGGAATCACCACTCCTAGGCTCCAAGGACCTTTACTTCCCCACCCAATACTCGCAAAGCTTCCCAACTCAATGCAAGGCTTGCTGTTGGAAACAACACTGGTCATACTGGAGGAATTCACACTACAATGCCATCAGGTTTTTCAACACAATAATCATTGGCGTACTTTTTGGTGTCATCTTCTGGAAGAAAGGAAACGTGTTAGAGAAACAACAAGATATTGTTAACCTTCCGGGAGCAACCTATTCTGCTGTTCTTTTCCTTGGAGCGGGAAATGCTTCTGCTGCGCAATCTGTGGTTTCGATTGAGAGAACTGTTTTCTACCGAGAAAGAGCAGCAGGAATGTATTCAAAGTTGCCTTATGCATCTGCTCGGTCCCTCGCTGCCCTTGCAGCCAACGCACACAGCCTAGCATATGCCGGCCCACCGTGTGAGCCCCTGCGCTCCTGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

300

Amino Acids

33.66

Weight (kDa)

8.79

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	3 - 91	9.6e-14	ABC-2 type transporter
ABC2_membrane	PF01061	172 - 280	6.9e-24	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031149)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001694.1_g000036
rosa_roxburghii	Rroxscaffold_1G00025290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	735
AccBSI	CCGCTC	1 cut(s)	716
AciI	CCGC	1 cut(s)	716
AclWI	GGATC	2 cut(s)	230, 254
AcsI	RAATTY	2 cut(s)	189, 562
AdeI	CACNNNGTG	1 cut(s)	878
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	3 cut(s)	292, 464, 715
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	4 cut(s)	380, 437, 592, 798
AjnI	CCWGG	1 cut(s)	301
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	6 cut(s)	8, 20, 91, 360, 421, 507
AluI	AGCT	6 cut(s)	8, 20, 91, 360, 421, 507
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	230, 254
AoxI	GGCC	2 cut(s)	294, 868
ApeKI	GCWGC	5 cut(s)	365, 731, 782, 830, 839
ApoI	RAATTY	2 cut(s)	189, 562
Asp700I	GAANNNNTTC	2 cut(s)	724, 793
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	2 cut(s)	736, 891
AspS9I	GGNCC	3 cut(s)	475, 822, 869
AsuC2I	CCSGG	1 cut(s)	681
AsuHPI	GGTGA	3 cut(s)	193, 410, 447
AvaII	GGWCC	2 cut(s)	475, 822
AvrII	CCTAGG	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	885
BbvI	GCAGC	5 cut(s)	352, 718, 794, 817, 851
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	264, 464, 857
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	5 cut(s)	366, 732, 783, 831, 840
BlnI	CCTAGG	1 cut(s)	463
BlsI	GCNGC	5 cut(s)	367, 733, 784, 832, 841
Bme1390I	CCNGG	2 cut(s)	303, 681
Bme18I	GGWCC	2 cut(s)	475, 822
BmgT120I	GGNCC	3 cut(s)	475, 822, 869
BmiI	GGNNCC	2 cut(s)	469, 824
BmrFI	CCNGG	2 cut(s)	303, 681
BmsI	GCATC	2 cut(s)	127, 821
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	577
BpuMI	CCSGG	1 cut(s)	681
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	463, 471, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 464, 715
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	4 cut(s)	116, 152, 551, 560
Bse3DI	GCAATG	2 cut(s)	51, 102
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	463, 471, 709
BseGI	GGATG	2 cut(s)	142, 351
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	292, 464, 715
BseMI	GCAATG	2 cut(s)	51, 102
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	4 cut(s)	116, 152, 551, 560
BseXI	GCAGC	5 cut(s)	352, 718, 794, 817, 851
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	296, 870
BsiSI	CCGG	3 cut(s)	109, 680, 867
BslFI	GGGAC	2 cut(s)	25, 808
BslI	CCNNNNNNNGG	3 cut(s)	292, 464, 715
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	25, 808
BsnI	GGCC	2 cut(s)	296, 870
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp143I	GATC	2 cut(s)	222, 259
BspACI	CCGC	1 cut(s)	716
BspANI	GGCC	2 cut(s)	296, 870
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	469, 824
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	230, 254
BsrBI	CCGCTC	1 cut(s)	716
BsrDI	GCAATG	2 cut(s)	51, 102
BsrFI	RCCGGY	1 cut(s)	866
BsrI	ACTGG	4 cut(s)	116, 152, 551, 560
BssAI	RCCGGY	1 cut(s)	866
BssECI	CCNNGG	3 cut(s)	463, 471, 709
BssMI	GATC	2 cut(s)	222, 259
BssT1I	CCWWGG	3 cut(s)	463, 471, 709
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	103, 763, 876
BstAPI	GCANNNNNTGC	2 cut(s)	92, 528
BstC8I	GCNNGC	4 cut(s)	93, 294, 529, 868
BstDEI	CTNAG	1 cut(s)	417
BstEII	GGTNACC	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	142, 351
BstHHI	GCGC	2 cut(s)	736, 891
BstKTI	GATC	2 cut(s)	225, 262
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	222, 259
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 92, 528, 722, 731, 836, 839, 845, 897
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	301, 679
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	352, 718, 794, 817, 851
BsuRI	GGCC	2 cut(s)	296, 870
BtsCI	GGATG	2 cut(s)	142, 351
BtsIMutI	CAGTG	4 cut(s)	123, 159, 207, 544
Cac8I	GCNNGC	4 cut(s)	93, 294, 529, 868
CfoI	GCGC	2 cut(s)	736, 891
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	3 cut(s)	475, 822, 869
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	3 cut(s)	70, 313, 342
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	224, 261
DpnII	GATC	2 cut(s)	222, 259
DraI	TTTAAA	1 cut(s)	127
DraIII	CACNNNGTG	1 cut(s)	878
Eco130I	CCWWGG	3 cut(s)	463, 471, 709
Eco24I	GRGCYC	1 cut(s)	885
Eco47I	GGWCC	2 cut(s)	475, 822
Eco91I	GGTNACC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	475
EcoO65I	GGTNACC	1 cut(s)	181
EcoRI	GAATTC	2 cut(s)	189, 562
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	3 cut(s)	463, 471, 709
EcoT22I	ATGCAT	1 cut(s)	814
EcoT38I	GRGCYC	1 cut(s)	885
ErhI	CCWWGG	3 cut(s)	463, 471, 709
FaeI	CATG	3 cut(s)	73, 316, 345
FaqI	GGGAC	2 cut(s)	25, 808
FatI	CATG	3 cut(s)	69, 312, 341
FauI	CCCGC	1 cut(s)	709
FauNDI	CATATG	1 cut(s)	862
Fnu4HI	GCNGC	5 cut(s)	366, 732, 783, 831, 840
FokI	GGATG	2 cut(s)	149, 358
FriOI	GRGCYC	1 cut(s)	885
Fsp4HI	GCNGC	5 cut(s)	366, 732, 783, 831, 840
FspBI	CTAG	3 cut(s)	264, 464, 857
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	2 cut(s)	735, 890
GluI	GCNGC	5 cut(s)	366, 732, 783, 831, 840
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	296, 870
HapII	CCGG	3 cut(s)	109, 680, 867
HhaI	GCGC	2 cut(s)	736, 891
Hin1II	CATG	3 cut(s)	73, 316, 345
Hin6I	GCGC	2 cut(s)	734, 889
HinP1I	GCGC	2 cut(s)	734, 889
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	3 cut(s)	23, 209, 452
HpaI	GTTAAC	1 cut(s)	673
HpaII	CCGG	3 cut(s)	109, 680, 867
HphI	GGTGA	3 cut(s)	193, 410, 447
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	2 cut(s)	437, 631
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	3 cut(s)	103, 763, 876
HpyCH4IV	ACGT	2 cut(s)	66, 645
HpyCH4V	TGCA	8 cut(s)	95, 254, 292, 368, 410, 522, 812, 839
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 92, 528, 722, 731, 836, 839, 845, 897
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	2 cut(s)	66, 645
Hsp92II	CATG	3 cut(s)	73, 316, 345
HspAI	GCGC	2 cut(s)	734, 889
KroI	GCCGGC	1 cut(s)	866
KroNI	GCCGGC	1 cut(s)	868
KspAI	GTTAAC	1 cut(s)	673
Kzo9I	GATC	2 cut(s)	222, 259
LmnI	GCTCC	5 cut(s)	429, 473, 683, 713, 896
Lsp1109I	GCAGC	5 cut(s)	352, 718, 794, 817, 851
LweI	GCATC	2 cut(s)	127, 821
MaeI	CTAG	3 cut(s)	264, 464, 857
MaeII	ACGT	2 cut(s)	66, 645
MaeIII	GTNAC	2 cut(s)	181, 269
MalI	GATC	2 cut(s)	224, 261
MbiI	CCGCTC	1 cut(s)	716
MboI	GATC	2 cut(s)	222, 259
MboII	GAAGA	2 cut(s)	619, 646
MhlI	GDGCHC	1 cut(s)	885
MluCI	AATT	3 cut(s)	31, 189, 562
MmeI	TCCRAC	2 cut(s)	186, 515
MnlI	CCTC	6 cut(s)	126, 296, 346, 367, 552, 836
Mph1103I	ATGCAT	1 cut(s)	814
MroNI	GCCGGC	1 cut(s)	866
MroXI	GAANNNNTTC	2 cut(s)	724, 793
MseI	TTAA	4 cut(s)	63, 75, 126, 672
MslI	CAYNNNNRTG	2 cut(s)	179, 573
MspI	CCGG	3 cut(s)	109, 680, 867
MspR9I	CCNGG	2 cut(s)	303, 681
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	9 cut(s)	26, 92, 528, 722, 731, 836, 839, 845, 897
NaeI	GCCGGC	1 cut(s)	868
NciI	CCSGG	1 cut(s)	681
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	2 cut(s)	222, 259
NgoMIV	GCCGGC	1 cut(s)	866
NlaIII	CATG	3 cut(s)	73, 316, 345
NlaIV	GGNNCC	2 cut(s)	469, 824
NmuCI	GTSAC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	735
NsiI	ATGCAT	1 cut(s)	814
PdiI	GCCGGC	1 cut(s)	868
PdmI	GAANNNNTTC	2 cut(s)	724, 793
PfeI	GAWTC	3 cut(s)	23, 209, 452
PfoI	TCCNGGA	2 cut(s)	301, 679
PkrI	GCNGC	5 cut(s)	367, 733, 784, 832, 841
PpuMI	RGGWCCY	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	469, 824
PspPI	GGNCC	3 cut(s)	475, 822, 869
PspPPI	RGGWCCY	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
RseI	CAYNNNNRTG	2 cut(s)	179, 573
SaqAI	TTAA	4 cut(s)	63, 75, 126, 672
SatI	GCNGC	5 cut(s)	366, 732, 783, 831, 840
Sau3AI	GATC	2 cut(s)	222, 259
Sau96I	GGNCC	3 cut(s)	475, 822, 869
ScrFI	CCNGG	2 cut(s)	303, 681
SduI	GDGCHC	1 cut(s)	885
SfaNI	GCATC	2 cut(s)	127, 821
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	2 cut(s)	475, 822
SmiMI	CAYNNNNRTG	2 cut(s)	179, 573
Sse9I	AATT	3 cut(s)	31, 189, 562
SsiI	CCGC	1 cut(s)	716
SspMI	CTAG	3 cut(s)	264, 464, 857
StyD4I	CCNGG	2 cut(s)	301, 679
StyI	CCWWGG	3 cut(s)	463, 471, 709
TaaI	ACNGT	3 cut(s)	103, 763, 876
TaiI	ACGT	2 cut(s)	69, 648
TaqI	TCGA	1 cut(s)	749
TaqII	GACCGA	1 cut(s)	810
TasI	AATT	3 cut(s)	31, 189, 562
TfiI	GAWTC	3 cut(s)	23, 209, 452
Tru1I	TTAA	4 cut(s)	63, 75, 126, 672
Tru9I	TTAA	4 cut(s)	63, 75, 126, 672
TscAI	CASTG	4 cut(s)	123, 159, 207, 551
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	5 cut(s)	365, 731, 782, 830, 839
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	4 cut(s)	123, 159, 207, 551
VpaK11BI	GGWCC	2 cut(s)	475, 822
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	189, 562
XmaJI	CCTAGG	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	724, 793
XspI	CTAG	3 cut(s)	264, 464, 857
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.