Rmu_sc0001700.1_g000057

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001700.1
OG0025516
Physical Location & Seq
Forward (+)
285720 .. 286412
693 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
atggagaaggaacagaaagcctgctacaaagctcattgtttggtcctaccctttccaacccaaggccacgttaatcccatgctccaattctccaagcgcttagagcgcaaaggcctcaaagtcacactcgtcgcaacccagtcatttcacaagctctcatcatccccgtccacgtccattacattagagagcatatccgatggctatgacgaaggcgggatggcggcagcggagagcattgatgcctatctagacagcttccgcgaagtcgggtcaaagaccttgacggggctcatcgagaagctctcggactcggcgcacaaagttgattgtattgtttatgatgcgtttatgccttggccgctggaagtggccaaaaggtttgggattgttggggtaactttcttcactcagtcttgtgctgttgacagtatatactacaatgtccaacagggtttgctcaaagttccatgtactaatgagtctgagatcgtgcttccgggattgtcagtaccgctacaagcttcggatatgccttctttcgtttctgtacctgcacagtacccggctttctttaaaatggttgtggatcagttctccaatgttggcaaagctgatttgatcctctgcaacacattttatgagctggaagtagaggtagtaaccaatcaccctacgctagaattgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

230

Amino Acids

25.41

Weight (kDa)

5.11

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 14 - 51 1.8e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025516)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001700.1_g000057 Rmu_sc0005654.1_g000013
rosa_samantha Rh6AG258400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 562
AccII CGCG 1 cut(s) 264
AciI CCGC 6 cut(s) 216, 224, 230, 262, 362, 515
AclWI GGATC 2 cut(s) 597, 616
AcoI YGGCCR 2 cut(s) 359, 372
AfaI GTAC 5 cut(s) 475, 513, 552, 563, 689
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 62, 288
AjiI CACGTC 1 cut(s) 174
AluBI AGCT 7 cut(s) 32, 154, 258, 304, 524, 614, 646
AluI AGCT 7 cut(s) 32, 154, 258, 304, 524, 614, 646
AlwI GGATC 2 cut(s) 597, 616
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 4 cut(s) 64, 112, 359, 372
ApeKI GCWGC 1 cut(s) 227
AspLEI GCGC 3 cut(s) 99, 108, 319
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 2 cut(s) 501, 566
AsuHPI GGTGA 1 cut(s) 662
AvaII GGWCC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 374
BanII GRGCYC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 239
BccI CCATC 2 cut(s) 194, 214
BcnI CCSGG 2 cut(s) 501, 566
BfaI CTAG 3 cut(s) 251, 680, 691
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 3 cut(s) 225, 228, 362
BlsI GCNGC 3 cut(s) 226, 229, 363
Bme1390I CCNGG 2 cut(s) 501, 566
Bme18I GGWCC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 501, 566
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 232, 334
BmuI ACTGGG 1 cut(s) 133
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpuMI CCSGG 2 cut(s) 501, 566
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 61, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 288
Bse1I ACTGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 61, 356
BseGI GGATG 2 cut(s) 161, 225
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 62, 288
BseMII CTCAG 2 cut(s) 425, 477
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 4 cut(s) 66, 114, 361, 374
BsiSI CCGG 2 cut(s) 500, 566
BslI CCNNNNNNNGG 2 cut(s) 62, 288
BsnI GGCC 4 cut(s) 66, 114, 361, 374
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 489, 589, 621
BspACI CCGC 6 cut(s) 216, 224, 230, 262, 362, 515
BspANI GGCC 4 cut(s) 66, 114, 361, 374
BspCNI CTCAG 2 cut(s) 424, 478
BspFNI CGCG 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 2 cut(s) 597, 616
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 61, 356
BssMI GATC 3 cut(s) 489, 589, 621
BssT1I CCWWGG 2 cut(s) 61, 356
Bst4CI ACNGT 2 cut(s) 431, 561
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 100, 411, 486
BstF5I GGATG 2 cut(s) 161, 225
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 3 cut(s) 99, 108, 319
BstKTI GATC 3 cut(s) 492, 592, 624
BstMBI GATC 3 cut(s) 489, 589, 621
BstMWI GCNNNNNNNGC 3 cut(s) 103, 105, 361
BstSCI CCNGG 2 cut(s) 499, 564
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 239
BsuRI GGCC 4 cut(s) 66, 114, 361, 374
BtrI CACGTC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 161, 225
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 3 cut(s) 99, 108, 319
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 5 cut(s) 474, 512, 551, 562, 688
CviAII CATG 2 cut(s) 79, 471
CviQI GTAC 5 cut(s) 474, 512, 551, 562, 688
DdeI CTNAG 3 cut(s) 100, 411, 486
DpnI GATC 3 cut(s) 491, 591, 623
DpnII GATC 3 cut(s) 489, 589, 621
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 2 cut(s) 359, 372
Eco130I CCWWGG 2 cut(s) 61, 356
Eco147I AGGCCT 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 43
Eco47III AGCGCT 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 61, 356
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 2 cut(s) 61, 356
FaeI CATG 2 cut(s) 82, 474
FatI CATG 2 cut(s) 78, 470
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 225, 228, 362
FokI GGATG 2 cut(s) 148, 232
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 225, 228, 362
FspBI CTAG 3 cut(s) 251, 680, 691
GlaI GCGC 3 cut(s) 98, 107, 318
GluI GCNGC 3 cut(s) 225, 228, 362
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 4 cut(s) 66, 114, 361, 374
HapII CCGG 2 cut(s) 500, 566
HhaI GCGC 3 cut(s) 99, 108, 319
Hin1II CATG 2 cut(s) 82, 474
Hin6I GCGC 3 cut(s) 97, 106, 317
HinP1I GCGC 3 cut(s) 97, 106, 317
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 2 cut(s) 311, 482
HpaII CCGG 2 cut(s) 500, 566
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 2 cut(s) 171, 427
Hpy188I TCNGA 4 cut(s) 199, 310, 487, 529
Hpy188III TCNNGA 2 cut(s) 251, 298
Hpy8I GTNNAC 2 cut(s) 171, 427
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 206, 546
HpyCH4III ACNGT 2 cut(s) 431, 561
HpyCH4IV ACGT 2 cut(s) 69, 173
HpyCH4V TGCA 2 cut(s) 557, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 105, 361
HpyF3I CTNAG 3 cut(s) 100, 411, 486
HpySE526I ACGT 2 cut(s) 69, 173
Hsp92II CATG 2 cut(s) 82, 474
HspAI GCGC 3 cut(s) 97, 106, 317
Kzo9I GATC 3 cut(s) 489, 589, 621
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 8 cut(s) 34, 152, 350, 437, 513, 567, 579, 632
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 2 cut(s) 232, 334
MaeI CTAG 3 cut(s) 251, 680, 691
MaeII ACGT 2 cut(s) 69, 173
MaeIII GTNAC 3 cut(s) 121, 397, 661
MalI GATC 3 cut(s) 491, 591, 623
MboI GATC 3 cut(s) 489, 589, 621
MboII GAAGA 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 2 cut(s) 86, 683
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 2 cut(s) 305, 491
MmeI TCCRAC 2 cut(s) 80, 472
MnlI CCTC 3 cut(s) 125, 635, 649
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 2 cut(s) 72, 576
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 2 cut(s) 230, 364
MspI CCGG 2 cut(s) 500, 566
MspR9I CCNGG 2 cut(s) 501, 566
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 103, 105, 361
NciI CCSGG 2 cut(s) 501, 566
NdeII GATC 3 cut(s) 489, 589, 621
NlaIII CATG 2 cut(s) 82, 474
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 1 cut(s) 121
PceI AGGCCT 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 226, 229, 363
PleI GAGTC 2 cut(s) 305, 490
PpsI GAGTC 2 cut(s) 305, 490
PspPI GGNCC 1 cut(s) 43
RsaI GTAC 5 cut(s) 475, 513, 552, 563, 689
RsaNI GTAC 5 cut(s) 474, 512, 551, 562, 688
SaqAI TTAA 2 cut(s) 72, 576
SatI GCNGC 3 cut(s) 225, 228, 362
Sau3AI GATC 3 cut(s) 489, 589, 621
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 2 cut(s) 305, 491
ScrFI CCNGG 2 cut(s) 501, 566
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 2 cut(s) 232, 334
SinI GGWCC 1 cut(s) 43
Sse9I AATT 2 cut(s) 86, 683
SseBI AGGCCT 1 cut(s) 114
SsiI CCGC 6 cut(s) 216, 224, 230, 262, 362, 515
SspMI CTAG 3 cut(s) 251, 680, 691
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 499, 564
StyI CCWWGG 2 cut(s) 61, 356
TaaI ACNGT 2 cut(s) 431, 561
TaiI ACGT 2 cut(s) 72, 176
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 86, 683
TatI WGTACW 2 cut(s) 473, 687
TauI GCSGC 2 cut(s) 227, 364
Tru1I TTAA 2 cut(s) 72, 576
Tru9I TTAA 2 cut(s) 72, 576
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 43
XbaI TCTAGA 1 cut(s) 250
XspI CTAG 3 cut(s) 251, 680, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.