Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005654.1

Orthogroup ID

OG0025516

Physical Location & Seq

Genomic Coordinates Forward (+)

63441 .. 64133

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005654.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggagaaggaacagaaagcctgctacaaagctcattgttttgtcctacgctttccaacccaaggccacggtaatcccatgctccaattctccaagtggttagagcgcaaaggcctcaaagtcacactcgtcacgacccagtcatttcacaagctctcatcatctccgtccacttccattacattagagagcatatccgatggctatgacgaaggcgggatggcggcagcggagagcattgatgcctatctagacagcttccgcgaagtcgggtcaaagaccttgacggggctcatcgagaagctctcggactcggggcacaaagttgattgtattgtttatgatgcgtttatgccttggccgttggaagtggccaaaaggtttgggattgttggggtaactttcttcactcagtcttgtgctgttgacagtatatactacaatgtccaacagggtttgctcaaagttccatgtactaatgagtctgagatcgtgcttccgggattgtcagtaccgctacaagcttcggatatgccttctttcgtttctgtacctgcacagtacccggctttctttaaaatggttgtggatcagttctccaatgttggcaaagctgatttgatcctctgcaacacattttatgagctggaagtagaggtagtaaccaatcaccctacgctagaattgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

230

Amino Acids

25.51

Weight (kDa)

5.11

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025516)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001700.1_g000057 Rmu_sc0005654.1_g000013
rosa_samantha	Rh6AG258400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccII	CGCG	1 cut(s)	264
AciI	CCGC	5 cut(s)	216, 224, 230, 262, 515
AclWI	GGATC	2 cut(s)	597, 616
AcoI	YGGCCR	2 cut(s)	359, 372
AfaI	GTAC	5 cut(s)	475, 513, 552, 563, 689
AfiI	CCNNNNNNNGG	2 cut(s)	62, 288
AluBI	AGCT	7 cut(s)	32, 154, 258, 304, 524, 614, 646
AluI	AGCT	7 cut(s)	32, 154, 258, 304, 524, 614, 646
AlwI	GGATC	2 cut(s)	597, 616
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	4 cut(s)	64, 112, 359, 372
ApeKI	GCWGC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	108
AsuC2I	CCSGG	2 cut(s)	501, 566
AsuHPI	GGTGA	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	2 cut(s)	194, 214
BceAI	ACGGC	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	501, 566
BfaI	CTAG	3 cut(s)	251, 680, 691
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	2 cut(s)	225, 228
BlsI	GCNGC	2 cut(s)	226, 229
Bme1390I	CCNGG	2 cut(s)	501, 566
BmeT110I	CYCGRG	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	501, 566
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	232, 334
BmuI	ACTGGG	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	2 cut(s)	501, 566
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	61, 67, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 288
Bse1I	ACTGG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	61, 67, 356
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	62, 288
BseMII	CTCAG	2 cut(s)	425, 477
BseNI	ACTGG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	540
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	4 cut(s)	66, 114, 361, 374
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	500, 566
BslI	CCNNNNNNNGG	2 cut(s)	62, 288
BsnI	GGCC	4 cut(s)	66, 114, 361, 374
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	294, 321
Bsp143I	GATC	3 cut(s)	489, 589, 621
BspACI	CCGC	5 cut(s)	216, 224, 230, 262, 515
BspANI	GGCC	4 cut(s)	66, 114, 361, 374
BspCNI	CTCAG	2 cut(s)	424, 478
BspFNI	CGCG	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	2 cut(s)	597, 616
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	61, 67, 356
BssMI	GATC	3 cut(s)	489, 589, 621
BssT1I	CCWWGG	2 cut(s)	61, 356
Bst4CI	ACNGT	3 cut(s)	71, 431, 561
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	411, 486
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	3 cut(s)	492, 592, 624
BstMBI	GATC	3 cut(s)	489, 589, 621
BstSCI	CCNGG	2 cut(s)	499, 564
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	66, 114, 361, 374
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	108
Csp6I	GTAC	5 cut(s)	474, 512, 551, 562, 688
CviAII	CATG	2 cut(s)	79, 471
CviQI	GTAC	5 cut(s)	474, 512, 551, 562, 688
DdeI	CTNAG	2 cut(s)	411, 486
DpnI	GATC	3 cut(s)	491, 591, 623
DpnII	GATC	3 cut(s)	489, 589, 621
DraI	TTTAAA	1 cut(s)	577
EaeI	YGGCCR	2 cut(s)	359, 372
Eco130I	CCWWGG	2 cut(s)	61, 356
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	61, 356
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	61, 356
FaeI	CATG	2 cut(s)	82, 474
FatI	CATG	2 cut(s)	78, 470
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	225, 228
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	225, 228
FspBI	CTAG	3 cut(s)	251, 680, 691
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	2 cut(s)	225, 228
HaeIII	GGCC	4 cut(s)	66, 114, 361, 374
HapII	CCGG	2 cut(s)	500, 566
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	82, 474
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	2 cut(s)	311, 482
HpaII	CCGG	2 cut(s)	500, 566
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	2 cut(s)	171, 427
Hpy188I	TCNGA	4 cut(s)	199, 310, 487, 529
Hpy188III	TCNNGA	3 cut(s)	133, 251, 298
Hpy8I	GTNNAC	2 cut(s)	171, 427
HpyAV	CCTTC	2 cut(s)	206, 546
HpyCH4III	ACNGT	3 cut(s)	71, 431, 561
HpyCH4V	TGCA	2 cut(s)	557, 630
HpyF3I	CTNAG	2 cut(s)	411, 486
Hsp92II	CATG	2 cut(s)	82, 474
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	489, 589, 621
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	7 cut(s)	34, 152, 437, 513, 567, 579, 632
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	2 cut(s)	232, 334
MaeI	CTAG	3 cut(s)	251, 680, 691
MaeIII	GTNAC	4 cut(s)	121, 130, 397, 661
MalI	GATC	3 cut(s)	491, 591, 623
MboI	GATC	3 cut(s)	489, 589, 621
MboII	GAAGA	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	294, 321
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	86, 683
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	2 cut(s)	305, 491
MmeI	TCCRAC	3 cut(s)	80, 345, 472
MnlI	CCTC	3 cut(s)	125, 635, 649
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	2 cut(s)	500, 566
MspR9I	CCNGG	2 cut(s)	501, 566
MvnI	CGCG	1 cut(s)	264
NciI	CCSGG	2 cut(s)	501, 566
NdeII	GATC	3 cut(s)	489, 589, 621
NlaIII	CATG	2 cut(s)	82, 474
NmuCI	GTSAC	2 cut(s)	121, 130
PceI	AGGCCT	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	2 cut(s)	226, 229
PleI	GAGTC	2 cut(s)	305, 490
PpsI	GAGTC	2 cut(s)	305, 490
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	5 cut(s)	475, 513, 552, 563, 689
RsaNI	GTAC	5 cut(s)	474, 512, 551, 562, 688
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	2 cut(s)	225, 228
Sau3AI	GATC	3 cut(s)	489, 589, 621
SchI	GAGTC	2 cut(s)	305, 491
ScrFI	CCNGG	2 cut(s)	501, 566
SduI	GDGCHC	2 cut(s)	294, 321
SfaNI	GCATC	2 cut(s)	232, 334
Sse9I	AATT	2 cut(s)	86, 683
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	5 cut(s)	216, 224, 230, 262, 515
SspMI	CTAG	3 cut(s)	251, 680, 691
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	499, 564
StyI	CCWWGG	2 cut(s)	61, 356
TaaI	ACNGT	3 cut(s)	71, 431, 561
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	86, 683
TatI	WGTACW	2 cut(s)	473, 687
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	121, 130
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	121, 130
TspGWI	ACGGA	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	3 cut(s)	251, 680, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.