Rh6AG258400

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0025516
Physical Location & Seq
Forward (+)
45005565 .. 45006251
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG258400.1

Sequence Viewer

Length: 687 bp
ATGGAGAAGGAAGATAAAGCCTACGAAGCTCATTGTTTAGTCGTATCGTTTCCAACTCAAGGCCACATTAATCCCATGCTCCAATTCTCCAAGCGCTTAGAGCGAAAAGGCCTCAAAGTTACACTGGTCACAACCCAATCATTTCACAAACGCTTGTCCTCGCCGTCCACATCCATCACATTAGAGACCATCTCCGATGGCCACGACGAAGGTGGGTCCGCAGAAGCCGAGAGCATGGAAGCCTATCTGGATAGATTTCGTGAAGTCGGATCAAGGACCCTGACTAAGCTCATCGAGAAGCTCTCAGACTCGGGGCATAAAGTTGATTGTATAGTTTATGATGCGTTTATTCCTTGGCCGCTGGAAGTGGCCAAAAGGTTTGGGATTGTTGGGGTAGCTTTCTTCACTCAGTCTTGTGCTGTTGACAACATATACTACAATGTCCAACAGGGTTTGCTCAAAGTTCCATGTACTAATGAGTCTGAGATTTTGCTTCCGGGAGTGCGAGTACCTCTTCGAGCTTCGGATATGCCTTCTTTTGTTTCCGTTCCCAGTCAGTACCCGGCTTTTCTTAGAATGGTTGTGGATCAGTTCTCCAATGTTGACAAAGCTGATTGGATCCTCTGCAACACATTTTATGAGCTGGAAGTAGAGGTACTAATCAATTCACTCTCCGGTTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

228

Amino Acids

25.57

Weight (kDa)

5.28

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025516)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001700.1_g000057 Rmu_sc0005654.1_g000013
rosa_samantha Rh6AG258400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 219, 359
AclWI GGATC 4 cut(s) 277, 594, 613, 626
AcoI YGGCCR 3 cut(s) 199, 356, 369
AfaI GTAC 4 cut(s) 472, 510, 560, 657
AfeI AGCGCT 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 7 cut(s) 29, 289, 301, 398, 521, 611, 643
AluI AGCT 7 cut(s) 29, 289, 301, 398, 521, 611, 643
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 4 cut(s) 277, 594, 613, 626
Ama87I CYCGRG 1 cut(s) 310
Aor51HI AGCGCT 1 cut(s) 95
AoxI GGCC 5 cut(s) 61, 109, 199, 356, 369
AseI ATTAAT 1 cut(s) 69
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 216, 276
AsuC2I CCSGG 2 cut(s) 498, 563
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 2 cut(s) 216, 276
BalI TGGCCA 2 cut(s) 201, 371
BamHI GGATCC 1 cut(s) 618
BarI GAAGNNNNNNTAC 2 cut(s) 639, 671
BccI CCATC 3 cut(s) 182, 191, 197
BceAI ACGGC 1 cut(s) 148
BcnI CCSGG 2 cut(s) 498, 563
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 685
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 2 cut(s) 498, 563
Bme18I GGWCC 2 cut(s) 216, 276
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 216, 276
BmiI GGNNCC 3 cut(s) 217, 278, 620
BmrFI CCNGG 2 cut(s) 498, 563
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 546
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 287, 319
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 2 cut(s) 498, 563
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 674
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 129, 552
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 3 cut(s) 318, 422, 474
BseNI ACTGG 2 cut(s) 129, 552
BshFI GGCC 5 cut(s) 63, 111, 201, 358, 371
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 3 cut(s) 497, 563, 675
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 5 cut(s) 63, 111, 201, 358, 371
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 310
Bsp143I GATC 3 cut(s) 269, 586, 618
BspACI CCGC 2 cut(s) 219, 359
BspANI GGCC 5 cut(s) 63, 111, 201, 358, 371
BspCNI CTCAG 3 cut(s) 317, 421, 475
BspLI GGNNCC 3 cut(s) 217, 278, 620
BspPI GGATC 4 cut(s) 277, 594, 613, 626
BspTNI GGTCTC 1 cut(s) 179
BsrI ACTGG 2 cut(s) 129, 552
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 3 cut(s) 269, 586, 618
BssT1I CCWWGG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 519
BstDEI CTNAG 6 cut(s) 97, 285, 304, 408, 483, 572
BstF5I GGATG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 272, 589, 621
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 269, 586, 618
BstMWI GCNNNNNNNGC 2 cut(s) 26, 100
BstSCI CCNGG 2 cut(s) 496, 561
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BsuRI GGCC 5 cut(s) 63, 111, 201, 358, 371
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 2 cut(s) 216, 276
Csp6I GTAC 4 cut(s) 471, 509, 559, 656
CviAII CATG 3 cut(s) 76, 235, 468
CviQI GTAC 4 cut(s) 471, 509, 559, 656
DdeI CTNAG 6 cut(s) 97, 285, 304, 408, 483, 572
DpnI GATC 3 cut(s) 271, 588, 620
DpnII GATC 3 cut(s) 269, 586, 618
EaeI YGGCCR 3 cut(s) 199, 356, 369
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 353
Eco147I AGGCCT 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 216, 276
Eco47III AGCGCT 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 3 cut(s) 79, 238, 471
FatI CATG 3 cut(s) 75, 234, 467
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 685
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 5 cut(s) 63, 111, 201, 358, 371
HapII CCGG 3 cut(s) 497, 563, 675
HhaI GCGC 1 cut(s) 96
Hin1II CATG 3 cut(s) 79, 238, 471
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 2 cut(s) 424, 604
HindII GTYRAC 2 cut(s) 424, 604
HinfI GANTC 2 cut(s) 308, 479
HpaII CCGG 3 cut(s) 497, 563, 675
Hpy166II GTNNAC 3 cut(s) 168, 424, 604
Hpy188I TCNGA 5 cut(s) 196, 269, 307, 484, 526
Hpy188III TCNNGA 3 cut(s) 248, 260, 295
Hpy8I GTNNAC 3 cut(s) 168, 424, 604
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 203, 543
HpyCH4V TGCA 1 cut(s) 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 100
HpyF3I CTNAG 6 cut(s) 97, 285, 304, 408, 483, 572
Hsp92II CATG 3 cut(s) 79, 238, 471
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 269, 586, 618
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 9 cut(s) 110, 233, 293, 347, 434, 510, 565, 576, 629
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 685
MaeIII GTNAC 2 cut(s) 118, 127
MalI GATC 3 cut(s) 271, 588, 620
MboI GATC 3 cut(s) 269, 586, 618
MboII GAAGA 3 cut(s) 23, 394, 506
MflI RGATCY 1 cut(s) 618
MlsI TGGCCA 2 cut(s) 201, 371
MluCI AATT 2 cut(s) 83, 664
MluNI TGGCCA 2 cut(s) 201, 371
MlyI GAGTC 2 cut(s) 302, 488
MmeI TCCRAC 3 cut(s) 77, 247, 469
MnlI CCTC 5 cut(s) 122, 169, 522, 632, 646
Mox20I TGGCCA 2 cut(s) 201, 371
MscI TGGCCA 2 cut(s) 201, 371
MseI TTAA 1 cut(s) 69
Msp20I TGGCCA 2 cut(s) 201, 371
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 3 cut(s) 497, 563, 675
MspR9I CCNGG 2 cut(s) 498, 563
MwoI GCNNNNNNNGC 2 cut(s) 26, 100
NciI CCSGG 2 cut(s) 498, 563
NdeII GATC 3 cut(s) 269, 586, 618
NlaIII CATG 3 cut(s) 79, 238, 471
NlaIV GGNNCC 3 cut(s) 217, 278, 620
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 127
PceI AGGCCT 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 496
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 2 cut(s) 302, 487
PpsI GAGTC 2 cut(s) 302, 487
PpuMI RGGWCCY 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 217, 278, 620
PspPI GGNCC 2 cut(s) 216, 276
PspPPI RGGWCCY 1 cut(s) 276
PsuI RGATCY 1 cut(s) 618
RsaI GTAC 4 cut(s) 472, 510, 560, 657
RsaNI GTAC 4 cut(s) 471, 509, 559, 656
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 3 cut(s) 269, 586, 618
Sau96I GGNCC 2 cut(s) 216, 276
SchI GAGTC 2 cut(s) 302, 488
ScrFI CCNGG 2 cut(s) 498, 563
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 2 cut(s) 216, 276
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 2 cut(s) 83, 664
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 2 cut(s) 219, 359
SspMI CTAG 1 cut(s) 685
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 496, 561
StyI CCWWGG 1 cut(s) 353
TaqI TCGA 2 cut(s) 294, 517
TasI AATT 2 cut(s) 83, 664
TatI WGTACW 1 cut(s) 470
TauI GCSGC 1 cut(s) 361
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 216, 276
VspI ATTAAT 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XspI CTAG 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.