Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001712.1

Orthogroup ID

OG0025517

Physical Location & Seq

Genomic Coordinates Forward (+)

41966 .. 42597

Gene Structure 632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgctttctctctctggaaggtggctgctagggtttctctgtcttctagggtttctatgtggctcctcggcactctggattcggggtggttgtttctgccctgcgtcggcgtctcaggatggtggagtgaatctccgtacaaacaacaacgttagagcagaaaaacaaaaacaaaaaatttatcccaacagcctcctcgccgatgcggcctctcctcgtcctcgtcctacaaaggtaaatggttcaaagataaaatgttcttaccgtccggttaacatagatgagccctctgtgaaagagattgcggagttcgctgtgttggaattgaacaagcagaagcaccagaagaacaagttggtcttggagagcgtgatcgcaggccagagtcagtgcgtcgccggaagaaattataagctcgtcattgcggttagggaagatgagtccttgcctacaaccccctctctgaattatgaggttttagtctttaggtctttgaagaatttcaaggaactcagatccttccatcaggttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

178

Amino Acids

19.78

Weight (kDa)

9.6

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	90 - 156	5.7e-11	Cystatin domain
SQAPI	PF16845	92 - 177	2.5e-18	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0025517)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001712.1_g000006
rosa_rugosa	Rorug04G0096900
rosa_samantha	Rh1CG096800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AciI	CCGC	3 cut(s)	206, 305, 425
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	177, 499
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	4 cut(s)	246, 328, 496, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	510
AoxI	GGCC	2 cut(s)	207, 379
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	177, 499
Asp700I	GAANNNNTTC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	2 cut(s)	113, 531
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	29, 47
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	26, 207
BlsI	GCNGC	2 cut(s)	27, 208
BmiI	GGNNCC	1 cut(s)	64
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	128, 526
BseRI	GAGGAG	3 cut(s)	55, 185, 204
BseXI	GCAGC	1 cut(s)	12
BshFI	GGCC	2 cut(s)	209, 381
BsiSI	CCGG	2 cut(s)	269, 399
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	209, 381
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	372, 515
BspACI	CCGC	3 cut(s)	206, 305, 425
BspANI	GGCC	2 cut(s)	209, 381
BspCNI	CTCAG	2 cut(s)	127, 525
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	372, 515
BssNI	GRCGYC	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	114, 512
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	375, 518
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	372, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 311
BstV1I	GCAGC	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	209, 381
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	379
CseI	GACGC	3 cut(s)	93, 99, 382
Csp6I	GTAC	1 cut(s)	138
CviJI	RGCY	7 cut(s)	25, 63, 192, 209, 286, 381, 415
CviKI_1	RGCY	7 cut(s)	25, 63, 192, 209, 286, 381, 415
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	114, 512
DpnI	GATC	2 cut(s)	374, 517
DpnII	GATC	2 cut(s)	372, 515
Eco24I	GRGCYC	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	117
FaiI	YATR	4 cut(s)	58, 278, 411, 471
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
Fnu4HI	GCNGC	2 cut(s)	26, 207
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	26, 207
FspBI	CTAG	2 cut(s)	29, 47
GluI	GCNGC	2 cut(s)	26, 207
HaeIII	GGCC	2 cut(s)	209, 381
HapII	CCGG	2 cut(s)	269, 399
HgaI	GACGC	3 cut(s)	93, 99, 382
Hin1I	GRCGYC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	4 cut(s)	79, 130, 385, 440
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	269, 399
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	465, 515
Hpy188III	TCNNGA	3 cut(s)	15, 76, 116
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	109, 398
HpyAV	CCTTC	2 cut(s)	12, 529
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 311
HpyF3I	CTNAG	2 cut(s)	114, 512
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	110
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	372, 515
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	61, 101, 114, 282, 356, 363, 395, 412, 512
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	29, 47
MaeII	ACGT	1 cut(s)	150
MalI	GATC	2 cut(s)	374, 517
MboI	GATC	2 cut(s)	372, 515
MboII	GAAGA	5 cut(s)	35, 358, 414, 446, 508
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	6 cut(s)	177, 323, 406, 466, 499, 532
MlyI	GAGTC	2 cut(s)	394, 449
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	9 cut(s)	76, 203, 206, 220, 225, 231, 298, 466, 469
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	3 cut(s)	273, 531, 535
MspI	CCGG	2 cut(s)	269, 399
MwoI	GCNNNNNNNGC	2 cut(s)	206, 311
NdeII	GATC	2 cut(s)	372, 515
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	47
PacI	TTAATTAA	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	79, 130
PkrI	GCNGC	2 cut(s)	27, 208
PleI	GAGTC	2 cut(s)	393, 448
PpsI	GAGTC	2 cut(s)	393, 448
PsiI	TTATAA	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	515
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	273, 531, 535
SatI	GCNGC	2 cut(s)	26, 207
Sau3AI	GATC	2 cut(s)	372, 515
SchI	GAGTC	2 cut(s)	394, 449
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	7 cut(s)	23, 153, 237, 417, 477, 491, 531
SfaNI	GCATC	1 cut(s)	193
Sse9I	AATT	6 cut(s)	177, 323, 406, 466, 499, 532
SsiI	CCGC	3 cut(s)	206, 305, 425
SspMI	CTAG	2 cut(s)	29, 47
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	153
TasI	AATT	6 cut(s)	177, 323, 406, 466, 499, 532
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	79, 130
Tru1I	TTAA	3 cut(s)	273, 531, 535
Tru9I	TTAA	3 cut(s)	273, 531, 535
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	177, 499
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	2 cut(s)	29, 47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.