Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0025517

Physical Location & Seq

Genomic Coordinates Reverse (-)

20724521 .. 20725254

Gene Structure 734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG096800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGAAAAATGCTTTCTCTCTCTGGAAGGTGGCTGCTAGGGTTTCTCTGTCTTCTAGGGTTTCTATGTGGCTCCTCGGCACTCTGGATTCGGGGTGGTTGTTTCTGCCCTGCGTCGGCGTCTCAGGATGGTGGAGGACTCTCTATATACAAGACAGTGAATCTCCGTACAAACAACAACGTTAGAGCAGAAAAACAAAAACAAAAAATTTATCCCAACAGCCTCCTCGCCGATGCGGCCTCTCCTCGTCCTCGTCCTACAAAGGTAAATGGTTCAAAGATAAAATGTTCTTACCGTCCGGTTAACATAGATGAGCCCTCTGTGAAAGAGATTGCGGAGTTCGCTGTGTTGGAATTGAACAAGCAGAAGCACCAGAAGAACAAGTTGGTCTTGGAGAGCGTGATCGCAGGCCAGAGTCAGTGCGTCGCCGGAAGAAATTATAAGCTCGTCATTGCGGTTAGGGAAGATGAGTCCTTGCCTACAACCCCCTCTCTGAATTATGAGGTTTTAGTCTTTAGGTCTTTGAAGAATTTCAAGGAACTCAGATCCTTCCATCAGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

9.69

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	100 - 166	6.4e-11	Cystatin domain
SQAPI	PF16845	102 - 187	2.8e-18	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025517)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001712.1_g000006
rosa_rugosa	Rorug04G0096900
rosa_samantha	Rh1CG096800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AciI	CCGC	3 cut(s)	236, 335, 455
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	540
AcsI	RAATTY	2 cut(s)	207, 529
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	276, 358, 526, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	540
AoxI	GGCC	2 cut(s)	237, 409
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	207, 529
Asp700I	GAANNNNTTC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	122, 561
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	38, 56
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	35, 237
BlsI	GCNGC	2 cut(s)	36, 238
BmiI	GGNNCC	1 cut(s)	73
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	137, 556
BseRI	GAGGAG	3 cut(s)	64, 215, 234
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	2 cut(s)	239, 411
BsiSI	CCGG	2 cut(s)	299, 429
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	239, 411
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	402, 545
BspACI	CCGC	3 cut(s)	236, 335, 455
BspANI	GGCC	2 cut(s)	239, 411
BspCNI	CTCAG	2 cut(s)	136, 555
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	402, 545
BssNI	GRCGYC	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	157, 296
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	123, 542
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	2 cut(s)	405, 548
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	402, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 341
BstV1I	GCAGC	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	239, 411
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	162, 425
Cac8I	GCNNGC	1 cut(s)	409
CseI	GACGC	3 cut(s)	102, 108, 412
Csp6I	GTAC	1 cut(s)	168
CviJI	RGCY	7 cut(s)	34, 72, 222, 239, 316, 411, 445
CviKI_1	RGCY	7 cut(s)	34, 72, 222, 239, 316, 411, 445
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	123, 542
DpnI	GATC	2 cut(s)	404, 547
DpnII	GATC	2 cut(s)	402, 545
Eco24I	GRGCYC	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	126
FaiI	YATR	6 cut(s)	67, 146, 148, 308, 441, 501
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
Fnu4HI	GCNGC	2 cut(s)	35, 237
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	35, 237
FspBI	CTAG	2 cut(s)	38, 56
GluI	GCNGC	2 cut(s)	35, 237
HaeIII	GGCC	2 cut(s)	239, 411
HapII	CCGG	2 cut(s)	299, 429
HgaI	GACGC	3 cut(s)	102, 108, 412
Hin1I	GRCGYC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	88, 138, 160, 415, 470
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	2 cut(s)	299, 429
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	495, 545
Hpy188III	TCNNGA	3 cut(s)	24, 85, 125
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	2 cut(s)	118, 428
HpyAV	CCTTC	2 cut(s)	21, 559
HpyCH4III	ACNGT	2 cut(s)	157, 296
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 341
HpyF3I	CTNAG	2 cut(s)	123, 542
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	119
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	402, 545
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	38, 56
MaeII	ACGT	1 cut(s)	180
MalI	GATC	2 cut(s)	404, 547
MboI	GATC	2 cut(s)	402, 545
MboII	GAAGA	5 cut(s)	44, 388, 444, 476, 538
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	6 cut(s)	207, 353, 436, 496, 529, 562
MlyI	GAGTC	3 cut(s)	132, 424, 479
MmeI	TCCRAC	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	530
MseI	TTAA	3 cut(s)	303, 561, 565
MspI	CCGG	2 cut(s)	299, 429
MwoI	GCNNNNNNNGC	2 cut(s)	236, 341
NdeII	GATC	2 cut(s)	402, 545
NlaIV	GGNNCC	1 cut(s)	73
NmeAIII	GCCGAG	1 cut(s)	56
PacI	TTAATTAA	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	88, 160
PkrI	GCNGC	2 cut(s)	36, 238
PleI	GAGTC	3 cut(s)	132, 423, 478
PpsI	GAGTC	3 cut(s)	132, 423, 478
PsiI	TTATAA	1 cut(s)	441
Psp1406I	AACGTT	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	545
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	303, 561, 565
SatI	GCNGC	2 cut(s)	35, 237
Sau3AI	GATC	2 cut(s)	402, 545
SchI	GAGTC	3 cut(s)	132, 424, 479
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	7 cut(s)	32, 183, 267, 447, 507, 521, 561
SfaNI	GCATC	1 cut(s)	223
Sse9I	AATT	6 cut(s)	207, 353, 436, 496, 529, 562
SsiI	CCGC	3 cut(s)	236, 335, 455
SspMI	CTAG	2 cut(s)	38, 56
TaaI	ACNGT	2 cut(s)	157, 296
TaiI	ACGT	1 cut(s)	183
TasI	AATT	6 cut(s)	207, 353, 436, 496, 529, 562
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	88, 160
Tru1I	TTAA	3 cut(s)	303, 561, 565
Tru9I	TTAA	3 cut(s)	303, 561, 565
TscAI	CASTG	2 cut(s)	162, 425
TseI	GCWGC	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	162, 425
XapI	RAATTY	2 cut(s)	207, 529
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	2 cut(s)	38, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.