Rmu_sc0001748.1_g000011

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001748.1
OG0025518
Physical Location & Seq
Forward (+)
48453 .. 48925
473 bp
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UTR
Exon/CDS
Intron
Rmu_sc0001748.1_g000011.1.cds

Sequence Viewer

Length: 390 bp
atgaagcaatgcaaggagggttgggacaatctagcgcctaatctgcaggtggtgttttatgatgagaatatgaagccatggaagttcaggtattgttaccggaagagcaaccagagttttgtgttcaaccgggttggaatcggtttgaagtggacagggcggaaagctgtcttggcagtgttgaaaataccaaccaatgtgtttccctcttccccatcaccttgcatgacaagaaaatttgaagatgaaaacgacaacataaagcctcaaatcccagcagttatcaacggagtgtcacaagtcaatggtgaatgtaaaagaactagactattgctaggcacatcggtctcgatgaagattgatgagcatacaacttgtgttcgagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2 B3

Protein Analysis

129

Amino Acids

14.78

Weight (kDa)

9.57

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025518)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001748.1_g000011
rosa_samantha Rh2AG012900 Rh2DG015200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AciI CCGC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 236
AgsI TTSAA 4 cut(s) 127, 148, 184, 242
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 210, 320
BccI CCATC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 3 cut(s) 32, 324, 335
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 14
BseYI CCCAGC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 100, 130
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 352
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 37
BspQI GCTCTTC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 98, 214
BstDSI CCRYGG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 43, 173
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 37
CviAII CATG 2 cut(s) 78, 226
CviJI RGCY 3 cut(s) 76, 167, 265
CviKI_1 RGCY 3 cut(s) 76, 167, 265
Eam1104I CTCTTC 2 cut(s) 98, 214
EarI CTCTTC 2 cut(s) 98, 214
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 2 cut(s) 81, 229
FaiI YATR 6 cut(s) 60, 71, 79, 227, 260, 369
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 77, 225
FspBI CTAG 3 cut(s) 32, 324, 335
GlaI GCGC 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 2 cut(s) 100, 130
HhaI GCGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 81, 229
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 1 cut(s) 138
HpaII CCGG 2 cut(s) 100, 130
HphI GGTGA 2 cut(s) 210, 320
Hpy166II GTNNAC 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 12, 46, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 173
Hsp92II CATG 2 cut(s) 81, 229
HspAI GCGC 1 cut(s) 35
LguI GCTCTTC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 32, 73, 113, 125, 141, 143, 288
MaeI CTAG 3 cut(s) 32, 324, 335
MaeIII GTNAC 2 cut(s) 95, 294
MboII GAAGA 4 cut(s) 115, 201, 254, 367
MluCI AATT 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 3 cut(s) 10, 217, 276
MspI CCGG 2 cut(s) 100, 130
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 43, 173
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 77
NlaIII CATG 2 cut(s) 81, 229
NmuCI GTSAC 1 cut(s) 294
PaqCI CACCTGC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 131
SetI ASST 4 cut(s) 51, 92, 169, 223
SfcI CTRYAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 160
SspMI CTAG 3 cut(s) 32, 324, 335
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 77
TaqI TCGA 2 cut(s) 350, 382
TaqII GACCGA 1 cut(s) 334
TasI AATT 1 cut(s) 236
TfiI GAWTC 1 cut(s) 138
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 4 cut(s) 17, 86, 261, 368
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 183
XapI RAATTY 1 cut(s) 236
XspI CTAG 3 cut(s) 32, 324, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.