Rmu_sc0001781.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001781.1
OG0031157
Physical Location & Seq
Forward (+)
173760 .. 175462
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001781.1_g000027.1.cds

Sequence Viewer

Length: 480 bp
atgacaaggcacatgaatgacgcgctccaaagtgaatacctcaatgaggaagacccaagaaagctatgggtagaacttgagcagcgatttggcaacgttcgtgactccctacttcctgatttagaagtgcgatggcatagcctccgcttttgtgatttcaagtctgtgcttgattataactcggaagctctttgtatcaagtctctgatggagttttgtggtcaaaccataactgatacgatgttgatcgagaagactctctctaccttcctcgtctctgccctgatgatttctgaccataatgatcgaaactgcggccagcgaccacagagtacccgtgaccgattatctacgcggtcgtaccggaaccctaatctgcgcggagttgcatttcaagaaaaccctaatttcagcagcggcggtgcatttgaagaaaaccctgatagcccatctaacaatcgtctgagaagaacccattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

159

Amino Acids

18.52

Weight (kDa)

5.81

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031157)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001781.1_g000027 Rmu_sc0002782.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccII CGCG 3 cut(s) 23, 355, 381
AciI CCGC 6 cut(s) 145, 315, 355, 381, 417, 420
AclI AACGTT 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 316
AfaI GTAC 2 cut(s) 334, 362
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 160, 395, 431
AluBI AGCT 2 cut(s) 64, 188
AluI AGCT 2 cut(s) 64, 188
Alw26I GTCTC 2 cut(s) 207, 280
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 82, 414
AspLEI GCGC 2 cut(s) 25, 381
BbsI GAAGAC 2 cut(s) 57, 260
BbvI GCAGC 2 cut(s) 94, 426
BccI CCATC 3 cut(s) 126, 202, 457
BcoDI GTCTC 2 cut(s) 207, 280
BisI GCNGC 4 cut(s) 83, 316, 415, 418
BlsI GCNGC 4 cut(s) 84, 317, 416, 419
BmiI GGNNCC 1 cut(s) 368
BpiI GAAGAC 2 cut(s) 57, 260
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 363
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 245
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 94, 426
Bsh1236I CGCG 3 cut(s) 23, 355, 381
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 2 cut(s) 207, 280
BsmBI CGTCTC 1 cut(s) 280
BsnI GGCC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 246, 304
BspACI CCGC 6 cut(s) 145, 315, 355, 381, 417, 420
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 3 cut(s) 23, 355, 381
BspLI GGNNCC 1 cut(s) 368
BssMI GATC 2 cut(s) 246, 304
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 464
BstENI CCTNNNNNAGG 1 cut(s) 44
BstFNI CGCG 3 cut(s) 23, 355, 381
BstHHI GCGC 2 cut(s) 25, 381
BstKTI GATC 2 cut(s) 249, 307
BstMAI GTCTC 2 cut(s) 207, 280
BstMBI GATC 2 cut(s) 246, 304
BstMCI CGRYCG 1 cut(s) 359
BstUI CGCG 3 cut(s) 23, 355, 381
BstV1I GCAGC 2 cut(s) 94, 426
BstV2I GAAGAC 2 cut(s) 57, 260
BsuRI GGCC 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 2 cut(s) 25, 381
CseI GACGC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 333, 361
CviAII CATG 1 cut(s) 13
CviJI RGCY 5 cut(s) 64, 141, 188, 318, 447
CviKI_1 RGCY 5 cut(s) 64, 141, 188, 318, 447
CviQI GTAC 2 cut(s) 333, 361
DdeI CTNAG 1 cut(s) 464
DpnI GATC 2 cut(s) 248, 306
DpnII GATC 2 cut(s) 246, 304
EaeI YGGCCR 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 16
FaiI YATR 6 cut(s) 14, 67, 138, 177, 230, 300
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 4 cut(s) 83, 316, 415, 418
Fsp4HI GCNGC 4 cut(s) 83, 316, 415, 418
GlaI GCGC 2 cut(s) 24, 380
GluI GCNGC 4 cut(s) 83, 316, 415, 418
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 364
HgaI GACGC 1 cut(s) 29
HhaI GCGC 2 cut(s) 25, 381
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 2 cut(s) 23, 379
HinP1I GCGC 2 cut(s) 23, 379
HinfI GANTC 2 cut(s) 104, 256
HpaII CCGG 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 184, 207, 295, 465
Hpy188III TCNNGA 4 cut(s) 101, 116, 250, 395
HpyAV CCTTC 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 389, 425
HpyF3I CTNAG 1 cut(s) 464
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 2 cut(s) 23, 379
Kzo9I GATC 2 cut(s) 246, 304
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 129, 296, 332, 377, 453
Lsp1109I GCAGC 2 cut(s) 94, 426
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 101, 338
MalI GATC 2 cut(s) 248, 306
MboI GATC 2 cut(s) 246, 304
MboII GAAGA 4 cut(s) 62, 265, 443, 480
MluCI AATT 1 cut(s) 406
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 4 cut(s) 40, 50, 152, 281
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 1 cut(s) 364
MvnI CGCG 3 cut(s) 23, 355, 381
NdeII GATC 2 cut(s) 246, 304
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 2 cut(s) 101, 338
PkrI GCNGC 4 cut(s) 84, 317, 416, 419
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
PsiI TTATAA 1 cut(s) 177
Psp1406I AACGTT 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 368
RsaI GTAC 2 cut(s) 334, 362
RsaNI GTAC 2 cut(s) 333, 361
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 4 cut(s) 83, 316, 415, 418
Sau3AI GATC 2 cut(s) 246, 304
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 5 cut(s) 42, 66, 99, 190, 269
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 406
SsiI CCGC 6 cut(s) 145, 315, 355, 381, 417, 420
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 249, 307
TaqII GACCGA 1 cut(s) 357
TasI AATT 1 cut(s) 406
TauI GCSGC 2 cut(s) 318, 420
TseFI GTSAC 2 cut(s) 101, 338
TseI GCWGC 2 cut(s) 82, 414
Tsp45I GTSAC 2 cut(s) 101, 338
TspDTI ATGAA 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.