Rmu_sc0002782.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002782.1
OG0031157
Physical Location & Seq
Reverse (-)
8591 .. 8902
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002782.1_g000006.1.cds

Sequence Viewer

Length: 312 bp
atgacaaggcacatgaatgacacgctccaaagtgaatacctcaatgaggaggaccccagaaaactatgggtagaactcgagcagcgatttggcaatgttcatgactccctgcttcctgatttagaagtaagatggcatagcctccgcttatgtgatttcaagtctgtacttgactataactcggaagcccttcgtatcaagtctttgatggagttctgtggaaagaccatcactgatacgatgttgatcgagaagactctctctaccttccccgtctctgcactgatgattgctaagaaattatcggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

103

Amino Acids

12.08

Weight (kDa)

5.33

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031157)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001781.1_g000027 Rmu_sc0002782.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 126, 202, 236
BcoDI GTCTC 1 cut(s) 280
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 245
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 1 cut(s) 145
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 44
BstKTI GATC 1 cut(s) 249
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 231, 281
CciI TCATGA 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 167
CviAII CATG 2 cut(s) 13, 101
CviJI RGCY 2 cut(s) 141, 188
CviKI_1 RGCY 2 cut(s) 141, 188
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 16, 104
FaiI YATR 6 cut(s) 14, 67, 102, 138, 151, 177
FatI CATG 2 cut(s) 12, 100
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 83
Hin1II CATG 2 cut(s) 16, 104
HinfI GANTC 2 cut(s) 104, 256
Hpy188I TCNGA 2 cut(s) 184, 307
Hpy188III TCNNGA 3 cut(s) 101, 116, 250
HpyAV CCTTC 2 cut(s) 200, 277
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 16, 104
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 3 cut(s) 70, 122, 129
Lsp1109I GCAGC 1 cut(s) 94
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 1 cut(s) 265
MluCI AATT 1 cut(s) 299
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 4 cut(s) 40, 43, 50, 152
MroXI GAANNNNTTC 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 15
NdeII GATC 1 cut(s) 246
NlaIII CATG 2 cut(s) 16, 104
NlaIV GGNNCC 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 77
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 2 cut(s) 42, 269
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 299
SsiI CCGC 1 cut(s) 145
TaqI TCGA 2 cut(s) 78, 249
TasI AATT 1 cut(s) 299
TatI WGTACW 1 cut(s) 166
TscAI CASTG 2 cut(s) 238, 288
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 29, 89
TspRI CASTG 2 cut(s) 238, 288
VpaK11BI GGWCC 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 44
XhoI CTCGAG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.