Rmu_sc0001782.1_g000009

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001782.1
OG0031158
Physical Location & Seq
Reverse (-)
56782 .. 57372
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001782.1_g000009.1.cds

Sequence Viewer

Length: 591 bp
ctgacctccagaatcaaacccatccttcttgacctccacgccaattacggccccatcgactctctccccatctccttcagttctcaccccgccattttcatcgacgaccactcacagtctcactcgcccaccaagtcttggtccaaaacggcgcagtctgttcggaccgccctccaccccagcccatcaccaagctcatcattagcgacaagccgacaatcgtgtcatcttcagcagcggctacggcccaacatggcgcctcctccgccggaaccttatctccgaggttctaaacccttcttggctcaggtcctacgcttcttcccgcaaatgggctctttggagtttggacatcctcaccaaccgtctcgatcagacgatcagtccgtatcgtccaacggaccagtcgtcgaagttttagaccattttcgattctccataacttctttgttcgtggatatagtgtttggtgagaaggtggaggatgaggcgaagatgaaagaaattgctgatgtgcagcttagctttggtcagaggtttccagaccctaaacttgggaccgagatggttgaacaagattttgttccgtaa

Protein Analysis

196

Amino Acids

21.83

Weight (kDa)

6.31

Isoelectric Point (pI)

66.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031158)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001782.1_g000009
rosa_samantha Rh2AG368300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 256
AccB7I CCANNNNNTGG 1 cut(s) 138
AciI CCGC 5 cut(s) 90, 168, 238, 266, 326
AcuI CTGAAG 2 cut(s) 61, 215
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 4 cut(s) 138, 331, 332, 554
AgsI TTSAA 1 cut(s) 572
AhdI GACNNNNNGTC 2 cut(s) 382, 407
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 3 cut(s) 195, 520, 525
AluI AGCT 3 cut(s) 195, 520, 525
Alw26I GTCTC 2 cut(s) 123, 372
AoxI GGCC 2 cut(s) 49, 245
ApeKI GCWGC 2 cut(s) 235, 517
AspLEI GCGC 2 cut(s) 154, 259
AspS9I GGNCC 7 cut(s) 50, 141, 165, 246, 310, 401, 558
AsuHPI GGTGA 4 cut(s) 77, 180, 350, 482
AvaII GGWCC 5 cut(s) 141, 165, 310, 401, 558
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 247, 529
BccI CCATC 5 cut(s) 29, 62, 77, 193, 559
BceAI ACGGC 3 cut(s) 64, 165, 260
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BcoDI GTCTC 2 cut(s) 123, 372
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 3 cut(s) 236, 239, 518
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 3 cut(s) 237, 240, 519
Bme18I GGWCC 5 cut(s) 141, 165, 310, 401, 558
BmeRI GACNNNNNGTC 2 cut(s) 382, 407
BmgT120I GGNCC 7 cut(s) 50, 141, 165, 246, 310, 401, 558
BmiI GGNNCC 4 cut(s) 52, 258, 273, 559
Bpu10I CCTNAGC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 331, 332, 554
Bse1I ACTGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 3 cut(s) 21, 352, 490
BseLI CCNNNNNNNGG 4 cut(s) 138, 331, 332, 554
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 247, 529
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 2 cut(s) 51, 247
BshNI GGYRCC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 4 cut(s) 138, 331, 332, 554
BsmAI GTCTC 2 cut(s) 123, 372
BsmBI CGTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 571
BsnI GGCC 2 cut(s) 51, 247
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 371, 379
Bsp1720I GCTNAGC 1 cut(s) 521
BspACI CCGC 5 cut(s) 90, 168, 238, 266, 326
BspANI GGCC 2 cut(s) 51, 247
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 4 cut(s) 52, 258, 273, 559
BspT107I GGYRCC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 371, 379
BssNI GRCGYC 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 117, 366
BstACI GRCGYC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 306, 521
BstF5I GGATG 3 cut(s) 21, 352, 490
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 2 cut(s) 154, 259
BstKTI GATC 2 cut(s) 374, 382
BstMAI GTCTC 2 cut(s) 123, 372
BstMBI GATC 2 cut(s) 371, 379
BstMWI GCNNNNNNNGC 2 cut(s) 244, 265
BstV1I GCAGC 2 cut(s) 247, 529
BsuRI GGCC 2 cut(s) 51, 247
BtsCI GGATG 3 cut(s) 21, 352, 490
CfoI GCGC 2 cut(s) 154, 259
Cfr13I GGNCC 7 cut(s) 50, 141, 165, 246, 310, 401, 558
CpoI CGGWCCG 1 cut(s) 165
CspI CGGWCCG 1 cut(s) 165
CviAII CATG 1 cut(s) 253
DdeI CTNAG 2 cut(s) 306, 521
DinI GGCGCC 1 cut(s) 258
DpnI GATC 2 cut(s) 373, 381
DpnII GATC 2 cut(s) 371, 379
DrdI GACNNNNNNGTC 1 cut(s) 222
DriI GACNNNNNGTC 2 cut(s) 382, 407
DseDI GACNNNNNNGTC 1 cut(s) 222
Eam1105I GACNNNNNGTC 2 cut(s) 382, 407
EciI GGCGGA 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 338
Eco47I GGWCC 5 cut(s) 141, 165, 310, 401, 558
Eco57I CTGAAG 2 cut(s) 61, 215
EcoO109I RGGNCCY 1 cut(s) 310
EcoT38I GRGCYC 1 cut(s) 338
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 372
FaeI CATG 1 cut(s) 256
FaiI YATR 3 cut(s) 254, 440, 461
FaqI GGGAC 1 cut(s) 571
FatI CATG 1 cut(s) 252
FauI CCCGC 2 cut(s) 97, 333
Fnu4HI GCNGC 3 cut(s) 236, 239, 518
FokI GGATG 3 cut(s) 8, 339, 497
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 3 cut(s) 236, 239, 518
GlaI GCGC 2 cut(s) 153, 258
GluI GCNGC 3 cut(s) 236, 239, 518
GsaI CCCAGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 2 cut(s) 51, 247
HapII CCGG 1 cut(s) 269
HhaI GCGC 2 cut(s) 154, 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 152, 257
HinP1I GCGC 2 cut(s) 152, 257
HinfI GANTC 3 cut(s) 12, 59, 432
HpaII CCGG 1 cut(s) 269
HphI GGTGA 4 cut(s) 77, 180, 350, 482
Hpy188I TCNGA 4 cut(s) 165, 284, 376, 534
Hpy188III TCNNGA 4 cut(s) 9, 29, 369, 542
Hpy99I CGWCG 2 cut(s) 107, 413
HpyAV CCTTC 4 cut(s) 35, 85, 307, 469
HpyCH4III ACNGT 2 cut(s) 117, 366
HpyCH4V TGCA 1 cut(s) 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 265
HpyF3I CTNAG 2 cut(s) 306, 521
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 152, 257
KasI GGCGCC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 371, 379
LpnPI CCDG 6 cut(s) 22, 193, 282, 293, 417, 555
Lsp1109I GCAGC 2 cut(s) 247, 529
MalI GATC 2 cut(s) 373, 381
MboI GATC 2 cut(s) 371, 379
MboII GAAGA 3 cut(s) 221, 313, 505
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 2 cut(s) 43, 504
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 244, 265
NarI GGCGCC 1 cut(s) 257
NdeII GATC 2 cut(s) 371, 379
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 4 cut(s) 52, 258, 273, 559
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 384, 405
PfeI GAWTC 2 cut(s) 12, 432
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 3 cut(s) 237, 240, 519
PleI GAGTC 1 cut(s) 53
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 179
PspN4I GGNNCC 4 cut(s) 52, 258, 273, 559
PspPI GGNCC 7 cut(s) 50, 141, 165, 246, 310, 401, 558
PspPPI RGGWCCY 1 cut(s) 310
Rsr2I CGGWCCG 1 cut(s) 165
RsrII CGGWCCG 1 cut(s) 165
SatI GCNGC 3 cut(s) 236, 239, 518
Sau3AI GATC 2 cut(s) 371, 379
Sau96I GGNCC 7 cut(s) 50, 141, 165, 246, 310, 401, 558
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 338
SfoI GGCGCC 1 cut(s) 258
SinI GGWCC 5 cut(s) 141, 165, 310, 401, 558
Sse9I AATT 2 cut(s) 43, 504
SsiI CCGC 5 cut(s) 90, 168, 238, 266, 326
SspDI GGCGCC 1 cut(s) 256
TaaI ACNGT 2 cut(s) 117, 366
TaqI TCGA 5 cut(s) 57, 102, 370, 411, 430
TaqII GACCGA 1 cut(s) 575
TasI AATT 2 cut(s) 43, 504
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 2 cut(s) 12, 432
TseI GCWGC 2 cut(s) 235, 517
TspDTI ATGAA 2 cut(s) 88, 512
TspGWI ACGGA 3 cut(s) 376, 414, 576
Van91I CCANNNNNTGG 1 cut(s) 138
VpaK11BI GGWCC 5 cut(s) 141, 165, 310, 401, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.