Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0025291

Physical Location & Seq

Genomic Coordinates Reverse (-)

312698 .. 312967

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgccatggccagtgatgctcggttggttaccagcgttatcatcgacgagtgcaaaggggtgttctgagggattggagtcattggtcaatgttggaggcggtacaggaactgtggccacggccattgtttatgcattcccacatattgaatgcactgtacttgatctccgacatgtggtggctgacctgcaaggaagcaagaacttgaaatatactgaagtgacatgtttgaggcagttcctcctgtcgatgcagttttacttgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009812 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030761 GO:0032259 GO:0044237 GO:0044249 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00945 map00945

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

6.7

Isoelectric Point (pI)

65.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025291)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010837
rosa_multiflora	Rmu_sc0001809.1_g000060
rosa_rugosa	Rorug06G0345800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
AciI	CCGC	1 cut(s)	99
AcoI	YGGCCR	3 cut(s)	8, 114, 120
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	2 cut(s)	103, 159
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	2 cut(s)	172, 224
AgsI	TTSAA	2 cut(s)	149, 208
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	8, 114, 120
BalI	TGGCCA	2 cut(s)	10, 116
BceAI	ACGGC	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	195
BmsI	GCATC	2 cut(s)	6, 240
BsaJI	CCNNGG	2 cut(s)	5, 117
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	5, 117
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	10, 116, 122
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmI	GAATGC	2 cut(s)	134, 155
BsnI	GGCC	3 cut(s)	10, 116, 122
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	1 cut(s)	5
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	3 cut(s)	10, 116, 122
BspCNI	CTCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	5, 117
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	112, 157
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	2 cut(s)	5, 117
BstEII	GGTNACC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	2 cut(s)	176, 228
BstPI	GGTNACC	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	10, 116, 122
BtgI	CCRYGG	2 cut(s)	5, 117
BtsIMutI	CAGTG	2 cut(s)	18, 153
BveI	ACCTGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	102, 158
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	3 cut(s)	6, 173, 225
CviJI	RGCY	4 cut(s)	10, 116, 122, 182
CviKI_1	RGCY	4 cut(s)	10, 116, 122, 182
CviQI	GTAC	2 cut(s)	102, 158
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	3 cut(s)	8, 114, 120
Eco130I	CCWWGG	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	3 cut(s)	9, 176, 228
FaiI	YATR	6 cut(s)	7, 132, 144, 174, 213, 226
FatI	CATG	3 cut(s)	5, 172, 224
HaeIII	GGCC	3 cut(s)	10, 116, 122
Hin1II	CATG	3 cut(s)	9, 176, 228
HinfI	GANTC	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	67, 170
Hpy99I	CGWCG	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	112, 157
HpyCH4V	TGCA	5 cut(s)	53, 134, 153, 190, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	9, 176, 228
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	24, 45, 90, 200, 257
LweI	GCATC	2 cut(s)	6, 240
MaeIII	GTNAC	2 cut(s)	27, 220
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MlsI	TGGCCA	2 cut(s)	10, 116
MluNI	TGGCCA	2 cut(s)	10, 116
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	73, 193
MnlI	CCTC	5 cut(s)	61, 89, 225, 251, 258
Mox20I	TGGCCA	2 cut(s)	10, 116
Mph1103I	ATGCAT	1 cut(s)	136
MscI	TGGCCA	2 cut(s)	10, 116
Msp20I	TGGCCA	2 cut(s)	10, 116
Mva1269I	GAATGC	2 cut(s)	134, 155
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	9, 176, 228
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	176, 228
PciI	ACATGT	2 cut(s)	172, 224
PctI	GAATGC	2 cut(s)	134, 155
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	2 cut(s)	172, 224
PspEI	GGTNACC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	103, 159
RsaNI	GTAC	2 cut(s)	102, 158
Sau3AI	GATC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	86
SetI	ASST	2 cut(s)	189, 269
SfaNI	GCATC	2 cut(s)	6, 240
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
SsiI	CCGC	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	112, 157
TaqI	TCGA	2 cut(s)	44, 248
TatI	WGTACW	1 cut(s)	157
TscAI	CASTG	2 cut(s)	18, 160
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspRI	CASTG	2 cut(s)	18, 160
XceI	RCATGY	2 cut(s)	176, 228
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.