Rmu_sc0001832.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001832.1
OG0031079
Physical Location & Seq
Reverse (-)
56406 .. 58525
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001832.1_g000019.1.cds

Sequence Viewer

Length: 1005 bp
atgctgcctccacccatcgctgctgcctcccacctgcagatccctgcaacccagcaccgatcgcagcccgatcccatcgctgctgcctcccacatgcagatccctgcaacccagcaccgatcgcagcccgatcccaacactgcaacccagcccctgcaccgatcaattcctgcaacccaccggacgtccgcgcctgctgcacttccaaatctatccggacaccagcccgcatcaccgcatcaatccaccgtcacagcacctagattggactcatccgctccccactgtcgcagcacccacatcggcgacgacgtagcaagccccgcgcaccagacagccctgcccagtagcccactgccccgcgccaacagccaagcgccctccccgacacctgcagatcccagcccagcccagcgcgctccagcccccgcgcacatccccgatccctggttggcgcgcccccagcagtacctgcaattctgcaaaccagaaggaaggaaagcaggaggaggaagaagagaagaggaaaaaaagagcttatgctgggaataccttcagttgaagacacccaaagaactgtgggatgcccttaagggacgttttgggaacattcatgacaccttgctcccaaaactgaccgttcagtggaatgaaatccgcttgcttgactacaaaaaggtcaatgacttcaataaggacatgttgcgcctaaaggcacgtctaaatttatgtggaaatgaactcacagaagatgatatgatccagaagactctttccacttttcctacttcagcaattatactagcgaaccggtataggctggagtatgataacaaaataatcacaactttcaataagctggtcaacctactgcaagtggttgagaggcataatgaggttcttttgagcaacaatgccagacccgttgggacaaagaaaattcctgaagctaattatggcaaagtcaaaggtggaacccaatgcaaagggggttggacgtgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

334

Amino Acids

36.85

Weight (kDa)

9.51

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031079)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000542.1_g000014 Rmu_sc0001832.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 42, 400
AatII GACGTC 1 cut(s) 188
Acc36I ACCTGC 3 cut(s) 42, 400, 480
AccBSI CCGCTC 1 cut(s) 278
AccII CGCG 6 cut(s) 191, 326, 363, 417, 431, 457
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 8 cut(s) 189, 228, 236, 276, 324, 361, 429, 658
AclWI GGATC 7 cut(s) 34, 65, 94, 125, 392, 437, 754
AcsI RAATTY 2 cut(s) 724, 939
AcuI CTGAAG 3 cut(s) 539, 774, 966
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 2 cut(s) 447, 645
AflII CTTAAG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 699
AgeI ACCGGT 1 cut(s) 810
AgsI TTSAA 3 cut(s) 562, 691, 853
AjiI CACGTC 2 cut(s) 719, 999
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 3 cut(s) 537, 859, 950
AluI AGCT 3 cut(s) 537, 859, 950
AlwI GGATC 7 cut(s) 34, 65, 94, 125, 392, 437, 754
AlwNI CAGNNNCTG 2 cut(s) 154, 472
Aor13HI TCCGGA 1 cut(s) 215
ApeKI GCWGC 9 cut(s) 4, 20, 23, 64, 80, 83, 124, 197, 291
ApoI RAATTY 2 cut(s) 724, 939
AscI GGCGCGCC 1 cut(s) 455
AsiGI ACCGGT 1 cut(s) 810
Asp700I GAANNNNTTC 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 569, 773
BbvI GCAGC 8 cut(s) 7, 10, 67, 70, 76, 136, 184, 303
BccI CCATC 2 cut(s) 23, 83
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 448
BfaI CTAG 2 cut(s) 261, 803
BfmI CTRYAG 2 cut(s) 35, 393
BfoI RGCGCY 1 cut(s) 380
BfrI CTTAAG 1 cut(s) 590
BfuAI ACCTGC 3 cut(s) 42, 400, 480
BisI GCNGC 9 cut(s) 5, 21, 24, 65, 81, 84, 125, 198, 292
BlsI GCNGC 9 cut(s) 6, 22, 25, 66, 82, 85, 126, 199, 293
Bme1390I CCNGG 1 cut(s) 448
BmgBI CACGTC 2 cut(s) 719, 999
BmiI GGNNCC 1 cut(s) 976
BmrFI CCNGG 1 cut(s) 448
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 3 cut(s) 239, 247, 574
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 569, 773
BpmI CTGGAG 2 cut(s) 405, 842
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 446
BsaWI WCCGGW 3 cut(s) 180, 215, 810
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 645
Bse118I RCCGGY 1 cut(s) 810
Bse1I ACTGG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 3 cut(s) 272, 435, 589
BseLI CCNNNNNNNGG 2 cut(s) 447, 645
BseNI ACTGG 1 cut(s) 345
BsePI GCGCGC 2 cut(s) 415, 455
BseRI GAGGAG 1 cut(s) 522
BseXI GCAGC 8 cut(s) 7, 10, 67, 70, 76, 136, 184, 303
BseYI CCCAGC 8 cut(s) 51, 111, 147, 401, 406, 411, 462, 543
BsgI GTGCAG 2 cut(s) 140, 183
Bsh1236I CGCG 6 cut(s) 191, 326, 363, 417, 431, 457
Bsh1285I CGRYCG 2 cut(s) 62, 122
BshTI ACCGGT 1 cut(s) 810
BsiEI CGRYCG 2 cut(s) 62, 122
BsiSI CCGG 3 cut(s) 181, 216, 811
BslFI GGGAC 2 cut(s) 609, 943
BslI CCNNNNNNNGG 2 cut(s) 447, 645
BsmFI GGGAC 2 cut(s) 609, 943
Bsp13I TCCGGA 1 cut(s) 215
BspACI CCGC 8 cut(s) 189, 228, 236, 276, 324, 361, 429, 658
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 6 cut(s) 191, 326, 363, 417, 431, 457
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 976
BspMAI CTGCAG 2 cut(s) 39, 397
BspMI ACCTGC 3 cut(s) 42, 400, 480
BspPI GGATC 7 cut(s) 34, 65, 94, 125, 392, 437, 754
BspTI CTTAAG 1 cut(s) 590
BsrBI CCGCTC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 810
BsrI ACTGG 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 810
BssECI CCNNGG 1 cut(s) 446
BssHII GCGCGC 2 cut(s) 415, 455
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 4 cut(s) 250, 287, 579, 640
Bst6I CTCTTC 2 cut(s) 511, 516
BstACI GRCGYC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 590
BstAPI GCANNNNNTGC 1 cut(s) 472
BstC8I GCNNGC 6 cut(s) 195, 228, 319, 417, 457, 662
BstF5I GGATG 3 cut(s) 272, 435, 589
BstFNI CGCG 6 cut(s) 191, 326, 363, 417, 431, 457
BstH2I RGCGCY 1 cut(s) 380
BstMCI CGRYCG 2 cut(s) 62, 122
BstMWI GCNNNNNNNGC 8 cut(s) 61, 121, 197, 323, 369, 416, 463, 472
BstNI CCWGG 1 cut(s) 448
BstNSI RCATGY 2 cut(s) 97, 703
BstSCI CCNGG 1 cut(s) 446
BstSFI CTRYAG 2 cut(s) 35, 393
BstUI CGCG 6 cut(s) 191, 326, 363, 417, 431, 457
BstV1I GCAGC 8 cut(s) 7, 10, 67, 70, 76, 136, 184, 303
BstV2I GAAGAC 2 cut(s) 569, 773
BstX2I RGATCY 3 cut(s) 39, 99, 397
BstYI RGATCY 3 cut(s) 39, 99, 397
BtgZI GCGATG 1 cut(s) 61
BtrI CACGTC 2 cut(s) 719, 999
BtsCI GGATG 3 cut(s) 272, 435, 589
BtsI GCAGTG 2 cut(s) 138, 353
BtsIMutI CAGTG 4 cut(s) 138, 283, 353, 650
BveI ACCTGC 3 cut(s) 42, 400, 480
Cac8I GCNNGC 6 cut(s) 195, 228, 319, 417, 457, 662
CaiI CAGNNNCTG 2 cut(s) 154, 472
CciI TCATGA 1 cut(s) 613
Cfr10I RCCGGY 1 cut(s) 810
Csp6I GTAC 1 cut(s) 469
CspAI ACCGGT 1 cut(s) 810
CviAII CATG 3 cut(s) 94, 614, 700
CviQI GTAC 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 511, 516
EarI CTCTTC 2 cut(s) 511, 516
Eco57I CTGAAG 3 cut(s) 539, 774, 966
EcoRII CCWGG 1 cut(s) 446
FaeI CATG 3 cut(s) 97, 617, 703
FaqI GGGAC 2 cut(s) 609, 943
FatI CATG 3 cut(s) 93, 613, 699
FauI CCCGC 4 cut(s) 235, 331, 368, 436
Fnu4HI GCNGC 9 cut(s) 5, 21, 24, 65, 81, 84, 125, 198, 292
FokI GGATG 3 cut(s) 259, 422, 596
Fsp4HI GCNGC 9 cut(s) 5, 21, 24, 65, 81, 84, 125, 198, 292
FspBI CTAG 2 cut(s) 261, 803
GluI GCNGC 9 cut(s) 5, 21, 24, 65, 81, 84, 125, 198, 292
GsaI CCCAGC 8 cut(s) 55, 115, 151, 405, 410, 415, 466, 547
GsuI CTGGAG 2 cut(s) 405, 842
HaeII RGCGCY 1 cut(s) 380
HapII CCGG 3 cut(s) 181, 216, 811
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 3 cut(s) 97, 617, 703
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 2 cut(s) 269, 769
HpaII CCGG 3 cut(s) 181, 216, 811
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 865
Hpy188III TCNNGA 4 cut(s) 216, 614, 763, 944
Hpy8I GTNNAC 1 cut(s) 865
Hpy99I CGWCG 2 cut(s) 311, 314
HpyAV CCTTC 3 cut(s) 485, 489, 563
HpyCH4III ACNGT 4 cut(s) 250, 287, 579, 640
HpyCH4IV ACGT 5 cut(s) 185, 312, 598, 718, 998
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 121, 197, 323, 369, 416, 463, 472
HpySE526I ACGT 5 cut(s) 185, 312, 598, 718, 998
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 3 cut(s) 97, 617, 703
Kpn2I TCCGGA 1 cut(s) 215
LmnI GCTCC 3 cut(s) 283, 424, 630
Lsp1109I GCAGC 8 cut(s) 7, 10, 67, 70, 76, 136, 184, 303
LweI GCATC 3 cut(s) 239, 247, 574
MaeI CTAG 2 cut(s) 261, 803
MaeII ACGT 5 cut(s) 185, 312, 598, 718, 998
MaeIII GTNAC 1 cut(s) 250
MbiI CCGCTC 1 cut(s) 278
MboII GAAGA 6 cut(s) 525, 528, 533, 574, 761, 778
MflI RGATCY 3 cut(s) 39, 99, 397
MluCI AATT 6 cut(s) 165, 476, 724, 795, 939, 952
MlyI GAGTC 2 cut(s) 263, 763
MmeI TCCRAC 1 cut(s) 974
MnlI CCTC 9 cut(s) 18, 37, 97, 391, 500, 503, 517, 879, 889
MroI TCCGGA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 1 cut(s) 591
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 3 cut(s) 181, 216, 811
MspR9I CCNGG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 448
MvnI CGCG 6 cut(s) 191, 326, 363, 417, 431, 457
MwoI GCNNNNNNNGC 8 cut(s) 61, 121, 197, 323, 369, 416, 463, 472
NlaIII CATG 3 cut(s) 97, 617, 703
NlaIV GGNNCC 1 cut(s) 976
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 2 cut(s) 97, 703
PagI TCATGA 1 cut(s) 613
PalAI GGCGCGCC 1 cut(s) 455
PaqCI CACCTGC 2 cut(s) 42, 400
PauI GCGCGC 2 cut(s) 415, 455
PciI ACATGT 1 cut(s) 699
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 552
PinAI ACCGGT 1 cut(s) 810
PkrI GCNGC 9 cut(s) 6, 22, 25, 66, 82, 85, 126, 199, 293
Ple19I CGATCG 2 cut(s) 62, 122
PleI GAGTC 2 cut(s) 263, 763
PpsI GAGTC 2 cut(s) 263, 763
PscI ACATGT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 446
PspFI CCCAGC 8 cut(s) 51, 111, 147, 401, 406, 411, 462, 543
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 976
PstI CTGCAG 2 cut(s) 39, 397
PstNI CAGNNNCTG 2 cut(s) 154, 472
PsuI RGATCY 3 cut(s) 39, 99, 397
PteI GCGCGC 2 cut(s) 415, 455
PvuI CGATCG 2 cut(s) 62, 122
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 9 cut(s) 5, 21, 24, 65, 81, 84, 125, 198, 292
SchI GAGTC 2 cut(s) 263, 763
ScrFI CCNGG 1 cut(s) 448
SfaNI GCATC 3 cut(s) 239, 247, 574
SfcI CTRYAG 2 cut(s) 35, 393
SgsI GGCGCGCC 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 6 cut(s) 165, 476, 724, 795, 939, 952
SsiI CCGC 8 cut(s) 189, 228, 236, 276, 324, 361, 429, 658
SspMI CTAG 2 cut(s) 261, 803
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 4 cut(s) 250, 287, 579, 640
TaiI ACGT 5 cut(s) 188, 315, 601, 721, 1001
TasI AATT 6 cut(s) 165, 476, 724, 795, 939, 952
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 4 cut(s) 145, 290, 360, 650
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 9 cut(s) 4, 20, 23, 64, 80, 83, 124, 197, 291
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 602, 666, 753
TspRI CASTG 4 cut(s) 145, 290, 360, 650
Vha464I CTTAAG 1 cut(s) 590
XapI RAATTY 2 cut(s) 724, 939
XceI RCATGY 2 cut(s) 97, 703
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 2 cut(s) 261, 803
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.