Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001889.1

Orthogroup ID

OG0031167

Physical Location & Seq

Genomic Coordinates Forward (+)

133731 .. 136032

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001889.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgccaggaaacaagtataactgcaatccctccacacccagaagtagattggaaaggcttctcagggaaagagagctaaggagatcaaatcttgcttcacaaccgaatgaagatgcaaacagacaggcagaactgagtgaatattttcttactgacggcgaaaatttagctctctctggtgatgaagattttgcagatggggttgcagcagcaagagcttttgttgatggatgtgaacggcaagagggacgaccttataaacaacggttattggttgtagccaacaggttacctgtctctgcagttaggaagggtgaagactcctggcagcttgagataagtgtaggagggctagtgagtgcacttttaggtgtgaaggagtttgatgccagatggattggttgggctggtgtaaatgtacctgatagtgttggacaaaaagcactgactaaagctttagctgaaaagaggtgcatcccagtgtttcttgacgaagaaattgttcatcaatattacaatggttattgcaacaacatcttgtggcctcttttccactatcttggacttccacaagaagaccgccttgcaaccacccggagtttccaatcacagtttgatgcatataagaaggcaaaccaaatgtttgctgatgttgtaaatgaacactacgaggatggagatgttgtttggtgccatgattaccacctgatgtttcttcctaaatgtctaaaagaacataacaacaagatgaaagttggttggtttctccatacaccttttccttcatcagaaatacataggacactgccatctcgatcagaactattgagatccgttcttgctgccgatttggttggattccatacatatgattatgcaaggcattttgttagtgcttgtactcgtattctgggtttagagggtacacctgaaggagtagaggatcaaggaaagctgactcgtgtagctgcagtatgtgtaatcagaaaaataagcctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

333

Amino Acids

37.75

Weight (kDa)

6.23

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031167)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001889.1_g000039 Rmu_sc0003748.1_g000024

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	690
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	2 cut(s)	825, 951
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	951
AfaI	GTAC	3 cut(s)	420, 901, 925
AjnI	CCWGG	2 cut(s)	4, 323
AluBI	AGCT	8 cut(s)	76, 170, 218, 331, 455, 461, 955, 968
AluI	AGCT	8 cut(s)	76, 170, 218, 331, 455, 461, 955, 968
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	301
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	825, 951
AoxI	GGCC	1 cut(s)	542
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	5 cut(s)	206, 209, 328, 842, 968
ApoI	RAATTY	1 cut(s)	163
Asp700I	GAANNNNTTC	3 cut(s)	57, 144, 501
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	191, 326
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	690
BauI	CACGAG	1 cut(s)	960
BbsI	GAAGAC	2 cut(s)	324, 582
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	5 cut(s)	218, 221, 340, 829, 955
BccI	CCATC	5 cut(s)	191, 221, 387, 668, 817
BceAI	ACGGC	2 cut(s)	172, 254
BciT130I	CCWGG	2 cut(s)	6, 325
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	300, 969
BisI	GCNGC	5 cut(s)	207, 210, 329, 843, 969
BlsI	GCNGC	5 cut(s)	208, 211, 330, 844, 970
Bme1390I	CCNGG	3 cut(s)	6, 325, 595
BmiI	GGNNCC	1 cut(s)	692
BmrFI	CCNGG	3 cut(s)	6, 325, 595
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	4 cut(s)	103, 376, 483, 607
BmuI	ACTGGG	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	324, 582
Bpu10I	CCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 369, 669, 699
Bse1I	ACTGG	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	6, 325
BseGI	GGATG	3 cut(s)	236, 474, 679
BseMII	CTCAG	2 cut(s)	76, 125
BseNI	ACTGG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	5 cut(s)	218, 221, 340, 829, 955
BshFI	GGCC	1 cut(s)	544
BshNI	GGYRCC	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	83, 815, 830, 943
BspACI	CCGC	1 cut(s)	580
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	2 cut(s)	75, 126
BspLI	GGNNCC	1 cut(s)	692
BspMAI	CTGCAG	2 cut(s)	304, 973
BspPI	GGATC	2 cut(s)	825, 951
BspT107I	GGYRCC	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	479
BssMI	GATC	4 cut(s)	83, 815, 830, 943
BssSI	CACGAG	1 cut(s)	960
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	2 cut(s)	6, 325
Bst4CI	ACNGT	2 cut(s)	267, 612
BstDEI	CTNAG	3 cut(s)	62, 77, 134
BstEII	GGTNACC	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	236, 474, 679
BstKTI	GATC	4 cut(s)	86, 818, 833, 946
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	4 cut(s)	83, 815, 830, 943
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	6, 325
BstPI	GGTNACC	1 cut(s)	288
BstSCI	CCNGG	3 cut(s)	4, 323, 593
BstSFI	CTRYAG	2 cut(s)	300, 969
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	5 cut(s)	218, 221, 340, 829, 955
BstV2I	GAAGAC	2 cut(s)	324, 582
BstX2I	RGATCY	1 cut(s)	830
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	236, 474, 679
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	3 cut(s)	443, 486, 803
Csp6I	GTAC	3 cut(s)	419, 900, 924
CviAII	CATG	1 cut(s)	695
CviQI	GTAC	3 cut(s)	419, 900, 924
DdeI	CTNAG	3 cut(s)	62, 77, 134
DpnI	GATC	4 cut(s)	85, 817, 832, 945
DpnII	GATC	4 cut(s)	83, 815, 830, 943
Eco57I	CTGAAG	1 cut(s)	951
Eco91I	GGTNACC	1 cut(s)	288
EcoO65I	GGTNACC	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	4, 323
EcoT22I	ATGCAT	1 cut(s)	622
FaeI	CATG	1 cut(s)	698
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	1 cut(s)	694
FauNDI	CATATG	1 cut(s)	868
Fnu4HI	GCNGC	5 cut(s)	207, 210, 329, 843, 969
FokI	GGATG	3 cut(s)	243, 461, 686
Fsp4HI	GCNGC	5 cut(s)	207, 210, 329, 843, 969
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	5 cut(s)	207, 210, 329, 843, 969
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	1 cut(s)	595
Hin1II	CATG	1 cut(s)	698
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	3 cut(s)	320, 858, 958
HpaII	CCGG	1 cut(s)	595
HphI	GGTGA	2 cut(s)	191, 326
Hpy166II	GTNNAC	3 cut(s)	236, 362, 926
Hpy188I	TCNGA	3 cut(s)	790, 820, 986
Hpy188III	TCNNGA	2 cut(s)	488, 813
Hpy8I	GTNNAC	3 cut(s)	236, 362, 926
HpyAV	CCTTC	5 cut(s)	304, 370, 622, 792, 926
HpyCH4III	ACNGT	2 cut(s)	267, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	62, 77, 134
Hsp92II	CATG	1 cut(s)	698
Kzo9I	GATC	4 cut(s)	83, 815, 830, 943
Lsp1109I	GCAGC	5 cut(s)	218, 221, 340, 829, 955
LweI	GCATC	4 cut(s)	103, 376, 483, 607
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	4 cut(s)	85, 817, 832, 945
MboI	GATC	4 cut(s)	83, 815, 830, 943
MboII	GAAGA	6 cut(s)	122, 197, 329, 506, 587, 707
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	2 cut(s)	163, 498
MlyI	GAGTC	2 cut(s)	314, 952
MmeI	TCCRAC	2 cut(s)	412, 835
MnlI	CCTC	8 cut(s)	40, 238, 341, 462, 555, 664, 913, 934
Mph1103I	ATGCAT	1 cut(s)	622
MroXI	GAANNNNTTC	3 cut(s)	57, 144, 501
MslI	CAYNNNNRTG	2 cut(s)	479, 867
MspI	CCGG	1 cut(s)	595
MspR9I	CCNGG	3 cut(s)	6, 325, 595
MvaI	CCWGG	2 cut(s)	6, 325
MwoI	GCNNNNNNNGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	595
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	4 cut(s)	83, 815, 830, 943
NlaIII	CATG	1 cut(s)	698
NlaIV	GGNNCC	1 cut(s)	692
NsiI	ATGCAT	1 cut(s)	622
PdmI	GAANNNNTTC	3 cut(s)	57, 144, 501
PfeI	GAWTC	1 cut(s)	858
PkrI	GCNGC	5 cut(s)	208, 211, 330, 844, 970
PleI	GAGTC	2 cut(s)	314, 952
PpsI	GAGTC	2 cut(s)	314, 952
PsiI	TTATAA	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	4, 323
PspEI	GGTNACC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	4, 323
PspN4I	GGNNCC	1 cut(s)	692
PstI	CTGCAG	2 cut(s)	304, 973
PsuI	RGATCY	1 cut(s)	830
RsaI	GTAC	3 cut(s)	420, 901, 925
RsaNI	GTAC	3 cut(s)	419, 900, 924
RseI	CAYNNNNRTG	2 cut(s)	479, 867
SatI	GCNGC	5 cut(s)	207, 210, 329, 843, 969
Sau3AI	GATC	4 cut(s)	83, 815, 830, 943
SchI	GAGTC	2 cut(s)	314, 952
ScrFI	CCNGG	3 cut(s)	6, 325, 595
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	4 cut(s)	103, 376, 483, 607
SfcI	CTRYAG	2 cut(s)	300, 969
SmiMI	CAYNNNNRTG	2 cut(s)	479, 867
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	163, 498
SsiI	CCGC	1 cut(s)	580
SspI	AATATT	2 cut(s)	143, 512
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	3 cut(s)	4, 323, 593
TaaI	ACNGT	2 cut(s)	267, 612
TaqI	TCGA	1 cut(s)	814
TasI	AATT	2 cut(s)	163, 498
TatI	WGTACW	1 cut(s)	899
TfiI	GAWTC	1 cut(s)	858
TscAI	CASTG	3 cut(s)	450, 486, 810
TseI	GCWGC	5 cut(s)	206, 209, 328, 842, 968
TspDTI	ATGAA	6 cut(s)	123, 198, 494, 675, 764, 774
TspGWI	ACGGA	1 cut(s)	823
TspRI	CASTG	3 cut(s)	450, 486, 810
VneI	GTGCAC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	3 cut(s)	57, 144, 501
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.